Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_I08
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.014
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.1 bits (77), Expect = 0.014
 Identities = 17/43 (39%), Positives = 18/43 (41%)
 Frame = +1

Query: 433 PPXKXPRGGXPGXKXFXPPGXEKXGXPXXPPPPPXXXXGGGXF 561
           PP     GG P      PPG    G P  PPPPP    GG  +
Sbjct: 752 PPPAPIMGGPPPPPP--PPGVAGAGPPPPPPPPPAVSAGGSRY 792


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 24/95 (25%), Positives = 24/95 (25%), Gaps = 7/95 (7%)
 Frame = +2

Query: 404  PPXGXPXXKXPPKXXPGGGP-------XGXXXFXPXGXKKXXXPXXPPPPXKXKXGGGXX 562
            PP   P    PP   P G P              P G      P    PP     G    
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPV 1161

Query: 563  XKXXFFXPPXKXKXXGGPPXIFXKXXGGXKKXPXP 667
             K     PP      G PP    K   G    P P
Sbjct: 1162 PKPSVAAPPVPAPSSGIPP--VPKPAAGVPPVPPP 1194


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 484 PPGXEKXGXPXXPPPP 531
           PPG E    P  PPPP
Sbjct: 15  PPGFEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,761,129
Number of Sequences: 5004
Number of extensions: 25749
Number of successful extensions: 67
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)