Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_I07
         (891 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    25   1.1  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    24   1.4  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    24   1.4  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   2.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   7.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   7.4  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   7.4  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 797 NPPFXPTAAPYPVTIVLSPTR 859
           NPP        PV +++SPTR
Sbjct: 225 NPPNTENNCAQPVVVIMSPTR 245


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 374 VSERGSGRAPNTQTASPRGVGRFINAEKTSHT 279
           + ER  G+ P    ++    G   NA+ TSHT
Sbjct: 33  IDERDGGKPPELTGSTNGDGGARSNADSTSHT 64


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 374 VSERGSGRAPNTQTASPRGVGRFINAEKTSHT 279
           + ER  G+ P    ++    G   NA+ TSHT
Sbjct: 189 IDERDGGKPPELTGSTNGDGGARSNADSTSHT 220


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 782 GAVCTNPPFXPTAAPYPVTIVLSPT 856
           G +C N P  P   P P+  +  PT
Sbjct: 168 GFLCNNYPPLPQVPPLPLPPIFPPT 192


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +1

Query: 397 CGERYQLTQRR*YGYPQNQGITQERTCEQKASKRPGT 507
           C  R QLT RR +  P        R C    +  PGT
Sbjct: 590 CRPREQLTWRRNFHGPHRLAARSRRCCYHAVA--PGT 624


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +1

Query: 397 CGERYQLTQRR*YGYPQNQGITQERTCEQKASKRPGT 507
           C  R QLT RR +  P        R C    +  PGT
Sbjct: 482 CRPREQLTWRRNFHGPHRLAARSRRCCYHAVA--PGT 516


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 779 AGAVCTNPPFXPTAAPYPVTIVLSPT 856
           AG +C N    P   P P+  + +PT
Sbjct: 167 AGFLCNNYLPLPQVPPLPLPPIFAPT 192


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,724
Number of Sequences: 336
Number of extensions: 3753
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24720487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)