Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_I07
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    29   0.67 
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    27   4.7  
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa...    27   4.7  

>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 22/65 (33%), Positives = 28/65 (43%)
 Frame = -1

Query: 786 APAWSERXTPKXRYXQREL*ESATLPEGRKADRYPGKRPGSEQESARGSFQGETPGIFIV 607
           APA+S        Y  REL   A    G  A  + G  PG    S  GS+  E   I ++
Sbjct: 126 APAFSGITAIATYYLARELKSDAC---GLLAAAFMGIAPGYTSRSVAGSYDNEAIAITLL 182

Query: 606 LSGFA 592
           +S FA
Sbjct: 183 MSTFA 187


>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 628 FPLEAPSCALLFRXW 672
           FPLE  +CA+ FR W
Sbjct: 177 FPLELTTCAITFRYW 191


>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 628 FPLEAPSCALLFRXW 672
           FPLE  +CA+ FR W
Sbjct: 170 FPLELTTCAITFRYW 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,152,318
Number of Sequences: 5004
Number of extensions: 58726
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)