Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_I07
         (891 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   1.2  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   3.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   4.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.6  

>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +1

Query: 616 DTRRFPLEAPSCALLFRXWPLTGIPVRL 699
           D   FP +  +C L F  W   G  V L
Sbjct: 156 DVEYFPFDEQTCVLKFGSWTYDGFKVDL 183


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/38 (26%), Positives = 15/38 (39%)
 Frame = +1

Query: 616 DTRRFPLEAPSCALLFRXWPLTGIPVRLSPFGKRGAFS 729
           D   FP +   C L +  W   G  + L    ++G  S
Sbjct: 134 DVEFFPFDEQRCVLKWASWTYDGYQLELEKQSEQGDVS 171


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +1

Query: 628 FPLEAPSCALLFRXWPLTGIPVRL 699
           FP +  SC + F  W   G  V L
Sbjct: 165 FPFDEQSCIMKFGSWTYNGAQVDL 188


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +1

Query: 625 RFPLEAPSCALLFRXW 672
           +FP +   C L+F  W
Sbjct: 148 KFPFDVQECPLIFESW 163


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/28 (32%), Positives = 11/28 (39%)
 Frame = +1

Query: 616 DTRRFPLEAPSCALLFRXWPLTGIPVRL 699
           D   FP +  +C L    W   G  V L
Sbjct: 156 DVEFFPYDVQTCVLKLGSWTYDGFKVDL 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,762
Number of Sequences: 438
Number of extensions: 5197
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)