Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_I04
         (910 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    25   4.2  
AY187043-1|AAO39757.1|  171|Anopheles gambiae putative antennal ...    24   7.3  
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            23   9.7  

>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 95  QQLTRLPNNLQFELSSQNLKD 33
           QQ+ R+ NNL+FE S    K+
Sbjct: 824 QQIDRINNNLEFERSKDTSKN 844


>AY187043-1|AAO39757.1|  171|Anopheles gambiae putative antennal
           carrier protein AP-1 protein.
          Length = 171

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
 Frame = -3

Query: 524 ALLSSTRTIHTLTTAASRSSR-----LVVCDHQLAKLSLHNNVLSNSPTKHELEKVQILR 360
           AL  S R + +L T +  S+       ++CD           V+  + TK ++ KVQ+ R
Sbjct: 28  ALNRSPRQLSSLLTLSGESNARIENGTIICDTLKCPAESFKCVIVKNSTKDDVNKVQVTR 87


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 23.4 bits (48), Expect = 9.7
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = -3

Query: 533 PIDALLSSTRTIHTLTTAASRSSRLVVCDHQLAKLSLHNNVLSNSPTK 390
           P+D  +++      L+   S        DHQL+++ L  N+ +N   K
Sbjct: 800 PLDGTITTGSAFVLLSDKTSLRLITTTTDHQLSEVELRPNLPANFVVK 847


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 840,729
Number of Sequences: 2352
Number of extensions: 15431
Number of successful extensions: 26
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 98401338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)