Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_I04
         (910 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   1.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.7  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   8.9  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 691 RGGYRAIRFATTAVGA 644
           R GY   RFA TA+GA
Sbjct: 401 RSGYSVARFAETALGA 416


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 593  RDPSRSTITIKQYTLHTKTHPIDALLSSTRTIHTLTTAAS 474
            R PS+    I QYT++TK    +   S     + LT  AS
Sbjct: 1201 RPPSQPNGVITQYTVYTKADNAEEPTSQKVPPNQLTHEAS 1240


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 491 LTTAASRSSRLVVCDHQLAKLSLHNN 414
           L TAA+ S   ++ + Q+ K S+HNN
Sbjct: 564 LNTAATLSFCEMIHNAQVNKRSIHNN 589


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/43 (23%), Positives = 21/43 (48%)
 Frame = -2

Query: 354 VCAASVM*ILMHSPVGRNQSTPIMHEHIGLNKIIATVSTTNDD 226
           VC  SVM + +H    R++   ++H    L +  +++   N +
Sbjct: 44  VCLGSVMQLPIHGTEPRSKEEILLHAKDFLEQYFSSIRRLNSE 86


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 112 VPTSLYSNSQDYQITYSLNFRLK 44
           VP  L   SQD  I YS+   +K
Sbjct: 137 VPNKLLRISQDGDILYSMRLTIK 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,542
Number of Sequences: 438
Number of extensions: 4378
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)