Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_H24
         (948 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4B0N9 Cluster: DNA polymerase III subunits gamma and t...    38   0.37 
UniRef50_Q47TA2 Cluster: Surface protein from Gram-positive cocc...    34   4.6  
UniRef50_Q5CF43 Cluster: Putative uncharacterized protein; n=57;...    34   6.1  
UniRef50_Q2UUH6 Cluster: Membrane coat complex Retromer; n=16; P...    34   6.1  
UniRef50_Q97SB1 Cluster: Putative uncharacterized protein; n=12;...    33   8.0  
UniRef50_A5ZX57 Cluster: Putative uncharacterized protein; n=1; ...    33   8.0  
UniRef50_A4QQH0 Cluster: Putative uncharacterized protein; n=2; ...    33   8.0  

>UniRef50_A4B0N9 Cluster: DNA polymerase III subunits gamma and tau;
           n=2; Bacteria|Rep: DNA polymerase III subunits gamma and
           tau - Alteromonas macleodii 'Deep ecotype'
          Length = 930

 Score = 37.9 bits (84), Expect = 0.37
 Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
 Frame = +2

Query: 464 HYEVHEFTDERLGPASPPYEEMLAASADHYQ-RYAVPPKSARYLDHSVNHVSGAHV-PLK 637
           HYE+     ER+   SP  EE L ++AD    R  +  K A+  D   N  + A      
Sbjct: 529 HYELDTPESERIVEPSPSAEEQLTSTADMLALRQKLKQKKAQDADAKSNSAANAKTQSAS 588

Query: 638 AAQINLSPSESVQFVPIATDPITVVNVDGPAPIHSGPLTQSPK 766
             Q   + S++     +A +  +   ++ P PI+S  L+ SP+
Sbjct: 589 EIQARFTRSKTDSASTVADEKNSPEPINSPEPINSPELSNSPE 631


>UniRef50_Q47TA2 Cluster: Surface protein from Gram-positive cocci,
           anchor region precursor; n=1; Thermobifida fusca YX|Rep:
           Surface protein from Gram-positive cocci, anchor region
           precursor - Thermobifida fusca (strain YX)
          Length = 302

 Score = 34.3 bits (75), Expect = 4.6
 Identities = 24/118 (20%), Positives = 40/118 (33%)
 Frame = +2

Query: 380 HHRVKRCCEYEKSRKRRSPAVRAPRQVHHYEVHEFTDERLGPASPPYEEMLAASADHYQR 559
           HH  K    +       SP  R PR  HH+  H  T        P +    +    H+  
Sbjct: 132 HHSHKPTHHHPTHLPTHSPTHRPPRPTHHHPTHHPTHSHHPTHHPTHHPTHSHKPTHHPT 191

Query: 560 YAVPPKSARYLDHSVNHVSGAHVPLKAAQINLSPSESVQFVPIATDPITVVNVDGPAP 733
           +  P  S +   H  +H + +H P      +  P+      P  +   +  +   P+P
Sbjct: 192 HH-PTHSHKPTHHPTHHPTHSHKPTHHPTHSHKPTHKPTHHPTHSPTHSPTHSHSPSP 248


>UniRef50_Q5CF43 Cluster: Putative uncharacterized protein; n=57;
            Eukaryota|Rep: Putative uncharacterized protein -
            Cryptosporidium hominis
          Length = 985

 Score = 33.9 bits (74), Expect = 6.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 605  NHVSGAHVPLKAAQINLSPSESVQFVPIATDPITVVNVDGP 727
            NH SGA  P K   +N    ES++ + +  DP+ ++N   P
Sbjct: 902  NHHSGAKTPYKEESVNWRLDESLEIIKLKDDPLYILNCTIP 942


>UniRef50_Q2UUH6 Cluster: Membrane coat complex Retromer; n=16;
           Pezizomycotina|Rep: Membrane coat complex Retromer -
           Aspergillus oryzae
          Length = 584

 Score = 33.9 bits (74), Expect = 6.1
 Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 5/119 (4%)
 Frame = +2

Query: 281 DEPWYXXXXXXXXXXXXXASY-RKKREVYDPNIDHHRVKRCCEYEKSRKRRSPAVRAPRQ 457
           D PW              ++Y  +  +V   +  +H  ++  +   S   RSP  R PR 
Sbjct: 7   DSPWGGKQAITNNTSASYSTYLTRSTDVPSQSTGNHAREQSSQQTTSTGPRSPVRRGPRG 66

Query: 458 VHHYEVH----EFTDERLGPASPPYEEMLAASADHYQRYAVPPKSARYLDHSVNHVSGA 622
           +     H    E  D+ L P  P  ++    S    ++  VPP+   +   +V   S A
Sbjct: 67  IRKISAHATKLEAVDDTLDPLGPLGDKADETSPAAVEQAPVPPQKEAFAGRNVRPTSSA 125


>UniRef50_Q97SB1 Cluster: Putative uncharacterized protein; n=12;
           Streptococcus|Rep: Putative uncharacterized protein -
           Streptococcus pneumoniae
          Length = 646

 Score = 33.5 bits (73), Expect = 8.0
 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
 Frame = +3

Query: 381 IIESNVAVNMKSQENDARQLSEHQDRFI-TTKYTSLQMKGWVRRHLRTRKCWQQVLIIIK 557
           IIE N++  + SQ+++ +QLS H++  +   K   LQ  G  R   + +  W+ VL  I+
Sbjct: 563 IIEENISKLLNSQKDEWKQLSYHREYVVKMAKALYLQATGKTR---QAQDEWRNVLNYIR 619

Query: 558 GTPCL-QSLQDIWTI 599
           G   L QS  D++ +
Sbjct: 620 GHELLFQSNLDVYRV 634


>UniRef50_A5ZX57 Cluster: Putative uncharacterized protein; n=1;
           Ruminococcus obeum ATCC 29174|Rep: Putative
           uncharacterized protein - Ruminococcus obeum ATCC 29174
          Length = 808

 Score = 33.5 bits (73), Expect = 8.0
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = +2

Query: 353 REVYDPNIDHHRVKRCCEYEKSRKRRSPAVRAPRQVHHYEVHEFTDERLGPASP--PYEE 526
           R+ YD + D+  + RCCE  K        +  PR ++H+  H        P S    YE 
Sbjct: 444 RQEYDGSQDYDFILRCCEQAKQ------VIHIPRVLYHWRCH-MNSVAANPESKTYAYEA 496

Query: 527 MLAASADHYQRYAV 568
              A  +HY+R  +
Sbjct: 497 GCRAIQEHYRRVGI 510


>UniRef50_A4QQH0 Cluster: Putative uncharacterized protein; n=2;
           Magnaporthe grisea|Rep: Putative uncharacterized protein
           - Magnaporthe grisea (Rice blast fungus) (Pyricularia
           grisea)
          Length = 578

 Score = 33.5 bits (73), Expect = 8.0
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = +2

Query: 431 SPAVRAPRQVHHYEVHEFTDERLGPASPPYEEMLAASADHYQRYAVPPKSARY 589
           +PA+RA   +H Y+ HEF ++     +  Y+  +A    HYQ  A PP +A Y
Sbjct: 328 TPALRALPWLHVYDDHEFANDWSANETGLYKAAVAPYW-HYQGRANPPSAASY 379


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 768,078,058
Number of Sequences: 1657284
Number of extensions: 14301504
Number of successful extensions: 41209
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 39543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41191
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 87365783978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)