Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_H24
         (948 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|...    29   0.72 
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    28   2.2  
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce...    27   5.1  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   5.1  
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    27   5.1  
SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|c...    26   8.9  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    26   8.9  

>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 330

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 539 LLPAFPRTEVTPDPTFHL*TRVLRSDEPVLVL 444
           LLP +P+ + TPD  F + T +    EPV ++
Sbjct: 105 LLPDYPKKKATPDAVFAMYTTISNYPEPVTLV 136


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 21/87 (24%), Positives = 35/87 (40%)
 Frame = +2

Query: 341 YRKKREVYDPNIDHHRVKRCCEYEKSRKRRSPAVRAPRQVHHYEVHEFTDERLGPASPPY 520
           YR  R+ Y  + D  R     EY +    RSP+ R  R+ +    +E    +   A+P  
Sbjct: 266 YRPGRDEYRRSRDDGRPSHDDEYRRDAYSRSPSPRRDREENRSPAYE--GSKSYSAAPEA 323

Query: 521 EEMLAASADHYQRYAVPPKSARYLDHS 601
               +A  + Y + A   +     +HS
Sbjct: 324 SMESSAPTESYDKPAASEEQQPLQNHS 350


>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +2

Query: 428 RSPAVRAPRQVHHYEVHEFTDERLGPASPPYEEMLAASADHYQRYAVPPKSARYLD 595
           R P+   P     Y  +E   E     S  Y  +LAA +D  + +++PP+   Y +
Sbjct: 208 RLPSYTKPDDDTVYHFNEDFKEYGASRSEFYPYLLAAVSDRGEHHSIPPEDTPYFN 263


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +3

Query: 774  MVEIFMEPPQEIIISILTDMDIPRWRS 854
            +++IF E   E++IS L ++DI  W++
Sbjct: 3091 LIQIFNEQELELLISGLPEIDIDDWKN 3117


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -1

Query: 216 QCAFTIKYNKLISKFXNNYIYMKN*MTFYIFSQLKDKHSF 97
           Q  + +K    +SK  N+ I ++N    ++ ++L+DKH F
Sbjct: 483 QKGYYLKILTRLSKICNSTILLRNEKENFLSTELQDKHVF 522


>SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 143

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 450 QDRFITTKYTSLQMKGWVRRHLRTRKCWQQVLIII 554
           +++ +TT   SL    W   +  T +C+QQV+ I+
Sbjct: 41  KEKLLTTSSNSLTHYQWYLIYKHTCRCFQQVVRIV 75


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +3

Query: 774 MVEIFMEPPQEIIISILTDMDIPRWRS 854
           +V +F E   E++I  ++D+D+  W+S
Sbjct: 652 LVNVFDERELELLIGGISDVDVEDWKS 678


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,207,843
Number of Sequences: 5004
Number of extensions: 59975
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)