Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_H24
(948 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1292 - 36037741-36039306 32 0.77
04_04_0939 - 29530242-29531087,29531406-29531597,29531690-295317... 31 1.3
08_02_0831 + 21619891-21620724 30 2.3
02_02_0426 - 10087547-10089054,10090744-10090762 30 2.3
05_03_0475 + 14486969-14487140,14487215-14487338,14487424-144875... 30 3.1
07_03_0072 - 13051145-13052362 29 4.1
07_03_0836 - 21856808-21858451,21858600-21859487,21860019-21860048 29 5.4
10_08_0600 - 19098312-19099439 29 7.1
06_03_0097 - 16607936-16608712,16610114-16610320,16611220-166113... 28 9.4
>01_06_1292 - 36037741-36039306
Length = 521
Score = 31.9 bits (69), Expect = 0.77
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 626 VPLKAAQINLS-PSESVQFVPIATDPITVVNVDGPAPIHSGPLTQSPKK 769
V L ++N + P E+ F T P T + +D P P+ G + Q PKK
Sbjct: 255 VELTGRELNFAIPQEACDFGTWRTMPNTEIELDRPHPVMKGNVHQHPKK 303
>04_04_0939 -
29530242-29531087,29531406-29531597,29531690-29531770,
29532300-29532428,29532579-29532650,29532761-29532829,
29533809-29533891,29534101-29534203,29534289-29534402,
29536230-29536274
Length = 577
Score = 31.1 bits (67), Expect = 1.3
Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 3/127 (2%)
Frame = +2
Query: 335 ASYRKKREVYDPNIDHHRVKRCCEYEKSRKRRSPAVRAPRQVHHYEVHEFTDERLGPASP 514
+S++ + P +HH K ++ RSP V+ V + + R G
Sbjct: 426 SSFQSNSQTPTPISEHHPAKHFNPIYQTSANRSPFSAVASGVNEASVSDISTRRFG---- 481
Query: 515 PYEEMLAASADHYQRYAV--PPKSARYLDHSVNHVSGAHVPLKAAQINLSPSESVQF-VP 685
A++AD R +V ++ R++ NH S + +P L +S+ F P
Sbjct: 482 ------ASNADRSSRSSVYWDQEAGRFVSSQANHGSSSRLPRSDL---LYTGQSIFFGGP 532
Query: 686 IATDPIT 706
+ TDP T
Sbjct: 533 LMTDPAT 539
>08_02_0831 + 21619891-21620724
Length = 277
Score = 30.3 bits (65), Expect = 2.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 498 WVRRHLRTRKCWQQVLIIIKGTPCLQSLQD 587
W+RRH+ + K W ++ + G +SLQD
Sbjct: 123 WLRRHVGSSKNWDKIRSCLAGADVCRSLQD 152
>02_02_0426 - 10087547-10089054,10090744-10090762
Length = 508
Score = 30.3 bits (65), Expect = 2.3
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 404 EYEKSRKRRSPAVRAPRQVHHYEVHEFTDERLGPASPPYEEML 532
E+ KR+ P +P V HE +R GP + PY++ L
Sbjct: 40 EFAGYHKRKPPHKPSPYLVAKLRSHEALQKRCGPGTAPYDKAL 82
>05_03_0475 +
14486969-14487140,14487215-14487338,14487424-14487559,
14487663-14488997
Length = 588
Score = 29.9 bits (64), Expect = 3.1
Identities = 24/97 (24%), Positives = 39/97 (40%)
Frame = +2
Query: 470 EVHEFTDERLGPASPPYEEMLAASADHYQRYAVPPKSARYLDHSVNHVSGAHVPLKAAQI 649
E H++ PASP + +A+A H+ A PP + + +PL +
Sbjct: 93 EKHDYDWLLTPPASPLWSPATSAAAGHHVSAAPPPSRLERASSAPYAKGNSRLPLTRRE- 151
Query: 650 NLSPSESVQFVPIATDPITVVNVDGPAPIHSGPLTQS 760
N P+ + AT ++ V P + SG T S
Sbjct: 152 NGPPASRLSRSSSATSQLSTV-AHAPGTVFSGRRTLS 187
>07_03_0072 - 13051145-13052362
Length = 405
Score = 29.5 bits (63), Expect = 4.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 834 DIPRWRSCEPWESSCXTWWQDNKGFIRTLRRQRXK 938
D RWR+C + WQ +G+ R+ RRQR +
Sbjct: 201 DQGRWRACLAGTRPRCSAWQCRRGYWRSQRRQRRR 235
>07_03_0836 - 21856808-21858451,21858600-21859487,21860019-21860048
Length = 853
Score = 29.1 bits (62), Expect = 5.4
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 587 YLDHSVNHVSGAHVPLKAAQINLSPSESVQF-VPIATD-PITVVNVDGPAPI 736
++D S NH G H + +N PS Q +P +TD P+ NVD P+
Sbjct: 289 WIDPSENHKKGNHAGIVQVMLN-HPSNQPQLGLPASTDSPVDFSNVDVRLPM 339
>10_08_0600 - 19098312-19099439
Length = 375
Score = 28.7 bits (61), Expect = 7.1
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 578 SARYLDHSVNHVSGAHVPLKAA 643
+AR+LDH+ ++ AH+PL AA
Sbjct: 21 AARHLDHTFEKLAAAHLPLVAA 42
>06_03_0097 - 16607936-16608712,16610114-16610320,16611220-16611336,
16611409-16611690,16611811-16612294,16612791-16612929,
16613138-16613243,16613396-16613562,16613632-16613707,
16614173-16614321,16614813-16614874,16615232-16615335,
16616856-16616950,16617046-16617136,16617785-16617922
Length = 997
Score = 28.3 bits (60), Expect = 9.4
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 365 DPNIDHHRVKRCCEYEKSRKRRSPAVRAPRQVHHYEVHEFTDER 496
D +I+HHR K+ + K R RRS + A Y + ++R
Sbjct: 912 DSSIEHHRSKKRKSHSKHRTRRSRSPYADSSDSQYTKRKHREKR 955
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,836,212
Number of Sequences: 37544
Number of extensions: 400037
Number of successful extensions: 1185
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2729534420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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