Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_H24
         (948 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical p...    32   0.69 
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ...    31   0.91 
Z22178-3|CAA80159.3| 1027|Caenorhabditis elegans Hypothetical pr...    29   6.4  
AF192400-1|AAF24233.1| 1027|Caenorhabditis elegans emb-30 protei...    29   6.4  
Z92838-3|CAB07409.2|  440|Caenorhabditis elegans Hypothetical pr...    28   8.5  
AL021503-3|CAA16423.1|  324|Caenorhabditis elegans Hypothetical ...    28   8.5  

>U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical
           protein R144.2a protein.
          Length = 823

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -2

Query: 623 GHQKRG*RNGPNILQTLEARRTFDNDQHLLPAFPRTEVTPDPTFHL 486
           GH  +G   GP I+ T+  RR   ++  L  + P   + P+P +HL
Sbjct: 489 GHPFKGQFGGPPIIATINGRR---HEIRLTGSAPEVRIEPEPAYHL 531


>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
           protein H11E01.3 protein.
          Length = 1464

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 431 SPAVRAPRQVHHYEVHEF-TDERLGPASPPYEEMLAASADHYQR 559
           SP V++    HH EVH F   E +  A P   + + +S DH+ R
Sbjct: 624 SPLVQSENFEHHAEVHSFHASEHIDEALPSPVQSVHSSHDHHDR 667


>Z22178-3|CAA80159.3| 1027|Caenorhabditis elegans Hypothetical protein
            F54C8.3 protein.
          Length = 1027

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
 Frame = +2

Query: 377  DH-HRVKRCCEYEK---SRKRRSPAVRAPRQVHHYEV--HEFT-DERLGPASPPYEEMLA 535
            DH  ++KRC E+EK   +  + S   R P +    EV  +E   D  LGP  P Y+ ++ 
Sbjct: 806  DHVEKLKRCYEFEKIDVTVDKSSAENRPPGETDAMEVDSNELRIDVDLGPVVPEYDTLIE 865

Query: 536  ASADH 550
             S  H
Sbjct: 866  LSQVH 870


>AF192400-1|AAF24233.1| 1027|Caenorhabditis elegans emb-30 protein
            protein.
          Length = 1027

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
 Frame = +2

Query: 377  DH-HRVKRCCEYEK---SRKRRSPAVRAPRQVHHYEV--HEFT-DERLGPASPPYEEMLA 535
            DH  ++KRC E+EK   +  + S   R P +    EV  +E   D  LGP  P Y+ ++ 
Sbjct: 806  DHVEKLKRCYEFEKIDVTVDKSSAENRPPGETDAMEVDSNELRIDVDLGPVVPEYDTLIE 865

Query: 536  ASADH 550
             S  H
Sbjct: 866  LSQVH 870


>Z92838-3|CAB07409.2|  440|Caenorhabditis elegans Hypothetical
           protein T03D8.4 protein.
          Length = 440

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +2

Query: 569 PPKSARYLDHSVNHVSGAHVPLKAAQINLSPSESVQFVPIATDP--ITVVNVDGPAPIHS 742
           PP+  RY   + N     +VP  A+ +N  PS +   VP+A     +T      P  +H 
Sbjct: 238 PPREIRYAYRTTNRQPVVYVP-SASPVN-QPSHASNTVPVAVASYLVTANPSSQPIQLHI 295

Query: 743 GPLTQSPK 766
            P   SP+
Sbjct: 296 LPPIPSPQ 303


>AL021503-3|CAA16423.1|  324|Caenorhabditis elegans Hypothetical
           protein Y68A4A.6 protein.
          Length = 324

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -3

Query: 343 VARIIVIVGLVDIFLFVPRFVDDLSDRDRHQQQPDY 236
           +  + V+  ++  F+++P  +D   +RD H QQ  Y
Sbjct: 190 ITALNVVTSVLSPFIYIPIMMDLRKNRDSHSQQQKY 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,052,500
Number of Sequences: 27780
Number of extensions: 352819
Number of successful extensions: 988
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2454664212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)