Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_H24
         (948 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   1.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   2.3  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   9.3  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +2

Query: 461 HHYEVHEFTDERLGPASPPYEEMLAASADHYQ 556
           HHY       +   P  PPY  M   +A +YQ
Sbjct: 64  HHYGAAGSQQDMPYPRFPPYNRMDMRNATYYQ 95


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +2

Query: 467 YEVHEFTDERLGPASP 514
           YE+H+ + ++L PA+P
Sbjct: 264 YEMHQISKKKLSPATP 279


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 34/142 (23%), Positives = 52/142 (36%), Gaps = 7/142 (4%)
 Frame = +2

Query: 365 DPNIDHHRVKRCCEYEKSRKRRSPAVRAPRQVHHYE---VHEFTDERLGPASPPYEEMLA 535
           D N   +  +R C  ++SR+ +    R   Q+H+ E   + E T  R    S   E+   
Sbjct: 241 DRNSYRNDGERSCSRDRSREYKKD--RRYDQLHNVEEKHLRERTSRRRYSRSREREQKSY 298

Query: 536 ASADHYQRYAVPPKSARYLDHSVNHVSGAHVPLKAAQINLSPSESV--QFVP--IATDPI 703
            +   Y+ Y    +  R  D      S  H  + +  I   P+      F P  I   P 
Sbjct: 299 KNEREYREYRETSRE-RSRDRRGRGRSREHRIIPSHYIEQIPAPVYYGNFPPRPIMVRPW 357

Query: 704 TVVNVDGPAPIHSGPLTQSPKK 769
             +    P   H GPLT  P +
Sbjct: 358 VPMRGQVPGSRHIGPLTPFPPR 379


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,277
Number of Sequences: 438
Number of extensions: 4729
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31081323
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)