Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_H23
         (963 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    40   0.13 
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    36   1.2  

>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 39.5 bits (88), Expect = 0.13
 Identities = 17/24 (70%), Positives = 17/24 (70%)
 Frame = +2

Query: 413 ASMXXPTRGEXXXAYWALFRFLXH 484
           A M  PTRGE   AYWALFRFL H
Sbjct: 26  ALMNRPTRGERRFAYWALFRFLAH 49


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 36.3 bits (80), Expect = 1.2
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +1

Query: 214 DPDMIRYMDEXGQXXTRMQ 270
           DPDMIRY+DE GQ  TRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 483,385,442
Number of Sequences: 1657284
Number of extensions: 5308683
Number of successful extensions: 4882
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4870
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 89407040613
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)