Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_H22
(882 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0405 - 3191639-3192059,3192107-3192234,3192312-3192440,319... 33 0.40
03_02_0102 + 5637469-5639064 32 0.70
03_05_0655 + 26491238-26491696 31 1.6
08_02_1182 + 24992256-24992708,24992942-24993238 30 2.1
03_03_0118 + 14597863-14597929,14598844-14599806,14599909-145999... 30 2.1
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591... 30 2.8
05_02_0009 - 5556606-5556829,5557164-5557504,5558758-5558945,555... 29 4.9
05_02_0007 - 5547004-5547275,5547375-5547403,5550481-5550938 29 4.9
03_02_0982 + 12925861-12926211,12926309-12926378,12927190-129272... 29 4.9
02_02_0018 - 6143333-6143689,6143897-6143943,6144025-6144139 29 4.9
01_05_0148 + 18609853-18610058,18610347-18612669 29 4.9
03_05_0127 + 21069312-21069668,21070023-21072830,21072975-21073178 29 6.5
>05_01_0405 -
3191639-3192059,3192107-3192234,3192312-3192440,
3193538-3193616,3193716-3193879,3193968-3194153,
3194258-3194389,3194484-3194575,3195054-3195150,
3195258-3195485
Length = 551
Score = 32.7 bits (71), Expect = 0.40
Identities = 24/70 (34%), Positives = 32/70 (45%)
Frame = +2
Query: 188 PILSLLHAHHTPQCQHWAVWALANLTTVYPEKYCNLVEAEGGLRLLNILLNHPAPYDQIK 367
PI L + + + AVWAL N+ P K +LV A GGL L LN A ++
Sbjct: 167 PIFVKLLSSPSEDVREQAVWALGNVAGDSP-KCRDLVLASGGLYPLLQQLNEHAKLSMLR 225
Query: 368 NLACIVINNC 397
N + N C
Sbjct: 226 NATWTLSNFC 235
Score = 31.5 bits (68), Expect = 0.93
Identities = 23/91 (25%), Positives = 44/91 (48%)
Frame = +2
Query: 146 DLHAERNINYRSFEPILSLLHAHHTPQCQHWAVWALANLTTVYPEKYCNLVEAEGGLRLL 325
D+ + I++++ +L+LL +H + A W ++N+T E+ ++ A L+
Sbjct: 322 DMQTQCVIDHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNREQIQAVINANIIAPLV 381
Query: 326 NILLNHPAPYDQIKNLACIVINNCTKYAVRD 418
++L A +D IK A I+N T D
Sbjct: 382 HLL--QTAEFD-IKKEAAWAISNATSGGTHD 409
>03_02_0102 + 5637469-5639064
Length = 531
Score = 31.9 bits (69), Expect = 0.70
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +1
Query: 127 TAXRALGPARRTQHQLSLLRTDTESAPR--SPHTAVPALGRV 246
TA LG ARR H LLR+ P +P TA+ LGRV
Sbjct: 115 TALYVLGRARRFAHMWDLLRSSRRLVPDAVTPRTAMVVLGRV 156
>03_05_0655 + 26491238-26491696
Length = 152
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Frame = -2
Query: 347 PDGSRECSAGAIRLRPPPNCSTSRGRLW*GWRAPTRPS-----AGTAVCGERG 204
P +E +IR+RPPP + GR G A RP A C ERG
Sbjct: 47 PPAKKEAVPHSIRVRPPPGAAGRGGRRGGGAAAAVRPEEDPFLAAFLACTERG 99
>08_02_1182 + 24992256-24992708,24992942-24993238
Length = 249
Score = 30.3 bits (65), Expect = 2.1
Identities = 27/115 (23%), Positives = 36/115 (31%)
Frame = +1
Query: 106 CVLHRVATAXRALGPARRTQHQLSLLRTDTESAPRSPHTAVPALGRVGARQPHHSLPREV 285
C HR+ A A R + +L L + A P R+P
Sbjct: 38 CPAHRLLLPQAAAARAARPRRRLRSLLPQPQRHADDADDAAPPTAAARPRRPRPFSRSRR 97
Query: 286 LQFGGGRRRIAPAEHSLEPSGSVRSDQEPGLHCNQQLH*IRRTRRLHSPDTDHSG 450
F RR+A E G S+ PG + R R +P T H G
Sbjct: 98 RAFMDRERRLASMESKNHSKGKKSSEACPGSSHLASVQKPPRQRPKSNPPTSHQG 152
>03_03_0118 +
14597863-14597929,14598844-14599806,14599909-14599936,
14600288-14600666
Length = 478
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +1
Query: 193 TESAPRSPHTAVPALGRVGARQPHHSLPREVLQFGGGRRRIAPAEHSLEPSGSVRSDQEP 372
T++ + + A+ ALG G P + P E +FGGG + + L+ SG V +
Sbjct: 198 TDTMVDAAYGAMRALGFPGGAIPVIAAPVETEEFGGGATTVVYHSYLLQASGGVGGGERR 257
Query: 373 GL 378
L
Sbjct: 258 SL 259
>04_04_1445 -
33658355-33658417,33658536-33658669,33659056-33659116,
33659197-33659356,33660032-33660081,33662237-33662290,
33662630-33662704,33662821-33662949,33663065-33663152,
33663266-33663372,33663513-33663561,33663657-33663760,
33663941-33663980,33664409-33664659,33664674-33664686,
33665846-33666355,33666437-33667657,33667973-33668221,
33668305-33668531
Length = 1194
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 332 ECSAGAIRLRPPPNCSTSRGRLW*GWRAPTRPSAGTAV 219
+C GA+R RP + + GR+W G R R ++G V
Sbjct: 753 QCQVGAVRARPAAAAAAAGGRVW-GVRRTGRGTSGFRV 789
>05_02_0009 -
5556606-5556829,5557164-5557504,5558758-5558945,
5558957-5559202
Length = 332
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 271 LPREVLQFGGGRRRIAPAEHSLEP 342
LP E L +GGG +AP H+L P
Sbjct: 26 LPMERLAYGGGEAVVAPLIHALRP 49
>05_02_0007 - 5547004-5547275,5547375-5547403,5550481-5550938
Length = 252
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 271 LPREVLQFGGGRRRIAPAEHSLEP 342
LP E L +GGG +AP H+L P
Sbjct: 30 LPTERLAYGGGEAVVAPIIHALRP 53
>03_02_0982 +
12925861-12926211,12926309-12926378,12927190-12927287,
12927467-12927615,12928083-12928198,12928521-12928617,
12929122-12929206,12929303-12929365,12929505-12929645
Length = 389
Score = 29.1 bits (62), Expect = 4.9
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +1
Query: 106 CVLHRVATAXRALGPARRTQHQLS-LLRTDTE-SAPRSPHTAVPALGRVGARQPHH 267
CV A++ R GP ++ LL + E S PH VP+ G VG HH
Sbjct: 11 CVARAAASSSRLRGPRPAASALVAPLLASPWEPSGGGQPHWLVPSRGHVGHSHHHH 66
>02_02_0018 - 6143333-6143689,6143897-6143943,6144025-6144139
Length = 172
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 97 SRVCVLHRVAT-AXRALGPARRTQHQLSLLRTDTESAPRSPHTAVPAL 237
S+V +R A A LG H L R+ T SAPR PH++ L
Sbjct: 87 SKVLAHNREAKGAANILGATLLRYHTAPLPRSSTTSAPRPPHSSATTL 134
>01_05_0148 + 18609853-18610058,18610347-18612669
Length = 842
Score = 29.1 bits (62), Expect = 4.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 368 NLACIVINNCTKYAVRDASTPPIPTTPD 451
++ C+V++NC ++ + S PI T PD
Sbjct: 485 SILCLVVDNCRYMSILELSGLPISTVPD 512
>03_05_0127 + 21069312-21069668,21070023-21072830,21072975-21073178
Length = 1122
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 259 VGERPHGPVLALRCVVSVEQTQYRFEGAIVDVAF 158
+GE P +L++ C+ VE + F G I AF
Sbjct: 835 LGELPRLRILSMECMTDVEHVRQEFRGNITTKAF 868
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,911,948
Number of Sequences: 37544
Number of extensions: 450901
Number of successful extensions: 1253
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1252
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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