Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_H22
         (882 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100306-8|ABB88213.1|  860|Caenorhabditis elegans Hypothetical ...    88   7e-18
AF100306-7|ABB88214.1|  895|Caenorhabditis elegans Hypothetical ...    88   7e-18
Z81102-2|CAB03203.1|  313|Caenorhabditis elegans Hypothetical pr...    33   0.20 
AF077533-2|AAP40529.1|  972|Caenorhabditis elegans Hypothetical ...    29   3.3  
AF077533-1|AAZ91357.1| 1126|Caenorhabditis elegans Hypothetical ...    29   3.3  
U56965-7|AAB52665.1|  122|Caenorhabditis elegans Peroxisome asse...    29   4.4  
Z46676-5|CAA86667.3|  418|Caenorhabditis elegans Hypothetical pr...    29   5.8  
U24189-2|AAC47513.1|  418|Caenorhabditis elegans actin-related p...    29   5.8  

>AF100306-8|ABB88213.1|  860|Caenorhabditis elegans Hypothetical
           protein T24C4.6a protein.
          Length = 860

 Score = 88.2 bits (209), Expect = 7e-18
 Identities = 44/84 (52%), Positives = 51/84 (60%)
 Frame = +2

Query: 143 WDLHAERNINYRSFEPILSLLHAHHTPQCQHWAVWALANLTTVYPEKYCNLVEAEGGLRL 322
           W L   R INYRSF PIL LL  +H    QHWAVWALANLTT   EKYC  V  EGG+ L
Sbjct: 747 WKLATRRFINYRSFRPILRLLPLYHAYASQHWAVWALANLTTTDGEKYCAYVRDEGGVPL 806

Query: 323 LNILLNHPAPYDQIKNLACIVINN 394
           L  L+++      I+ LA  V+ N
Sbjct: 807 LEELVSNAITTTDIRTLANTVLEN 830


>AF100306-7|ABB88214.1|  895|Caenorhabditis elegans Hypothetical
           protein T24C4.6b protein.
          Length = 895

 Score = 88.2 bits (209), Expect = 7e-18
 Identities = 44/84 (52%), Positives = 51/84 (60%)
 Frame = +2

Query: 143 WDLHAERNINYRSFEPILSLLHAHHTPQCQHWAVWALANLTTVYPEKYCNLVEAEGGLRL 322
           W L   R INYRSF PIL LL  +H    QHWAVWALANLTT   EKYC  V  EGG+ L
Sbjct: 747 WKLATRRFINYRSFRPILRLLPLYHAYASQHWAVWALANLTTTDGEKYCAYVRDEGGVPL 806

Query: 323 LNILLNHPAPYDQIKNLACIVINN 394
           L  L+++      I+ LA  V+ N
Sbjct: 807 LEELVSNAITTTDIRTLANTVLEN 830


>Z81102-2|CAB03203.1|  313|Caenorhabditis elegans Hypothetical
           protein M02B1.4 protein.
          Length = 313

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 356 DQIKNLACIVINNCTKYAVRDASTPPIPTT-PDN*LMEYFE 475
           +Q K++A IV   C K  +R     P+P T P N LMEY E
Sbjct: 34  EQPKSIAAIVWTECEKIMLRVFDAKPLPPTFPRNLLMEYVE 74


>AF077533-2|AAP40529.1|  972|Caenorhabditis elegans Hypothetical
           protein F54G2.1b protein.
          Length = 972

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +2

Query: 251 LANLTTVYPEKYCNLVEAEGGLRLLNILLNHPAPYDQIKNLACIVINNC 397
           +  + TVY +K  + +EAEG  + L   +  P+   Q+ +L C  INNC
Sbjct: 724 ICEIVTVYTQKIISGLEAEGFTQELQAFI--PS---QLLHLLCAAINNC 767


>AF077533-1|AAZ91357.1| 1126|Caenorhabditis elegans Hypothetical
           protein F54G2.1a protein.
          Length = 1126

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +2

Query: 251 LANLTTVYPEKYCNLVEAEGGLRLLNILLNHPAPYDQIKNLACIVINNC 397
           +  + TVY +K  + +EAEG  + L   +  P+   Q+ +L C  INNC
Sbjct: 708 ICEIVTVYTQKIISGLEAEGFTQELQAFI--PS---QLLHLLCAAINNC 751


>U56965-7|AAB52665.1|  122|Caenorhabditis elegans Peroxisome
           assembly factor protein3 protein.
          Length = 122

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +1

Query: 40  KILPHGVLTGRALGPVDEPSRVCVLHRVATAXRALGPARR 159
           KI+  GVL G A+  V   SR   L +V+T+      ARR
Sbjct: 15  KIIAGGVLVGSAIAYVQSSSRPKTLEKVSTSSELPNQARR 54


>Z46676-5|CAA86667.3|  418|Caenorhabditis elegans Hypothetical
           protein C08B11.6 protein.
          Length = 418

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +1

Query: 307 RRIAPAEHSLEPSGSVRSDQEPGLHCNQQLH*IRRTRRLHSPDTDHSG 450
           R + PAE+ L  S  V + Q    HC Q+L    +   ++  D D  G
Sbjct: 333 RSMLPAEYGLNVSNDVINPQTHSWHCGQELLTASKVPWINRKDWDERG 380


>U24189-2|AAC47513.1|  418|Caenorhabditis elegans actin-related
           protein-like protein.
          Length = 418

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +1

Query: 307 RRIAPAEHSLEPSGSVRSDQEPGLHCNQQLH*IRRTRRLHSPDTDHSG 450
           R + PAE+ L  S  V + Q    HC Q+L    +   ++  D D  G
Sbjct: 333 RSMLPAEYGLNVSNDVINPQTHSWHCGQELLTASKVPWINRKDWDERG 380


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,041,099
Number of Sequences: 27780
Number of extensions: 360410
Number of successful extensions: 1034
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)