Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_H22
         (882 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.8  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   3.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   8.6  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 314 LRLLNILLNHPAPYDQIKN 370
           L++L + LNH   YDQ+ N
Sbjct: 655 LQVLALWLNHSPNYDQVTN 673


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 515 CRGTAILRGRGQSPQSTPLVNY 450
           CR TA L G      + P+VNY
Sbjct: 148 CRYTASLAGNVAPASADPMVNY 169


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -3

Query: 550  YCKTQTNYQGNPAEV 506
            YC+T+ +  G+PA++
Sbjct: 1206 YCQTEEDVPGSPADI 1220


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -3

Query: 550  YCKTQTNYQGNPAEV 506
            YC+T+ +  G+PA++
Sbjct: 1202 YCQTEEDVPGSPADI 1216


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = +1

Query: 205 PRSPHTAVPALGRVGA-RQP 261
           PRS H  V  + RVG+ R+P
Sbjct: 385 PRSTHLKVSGINRVGSTRRP 404


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,178
Number of Sequences: 438
Number of extensions: 4573
Number of successful extensions: 29
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)