Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_H21
         (909 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal prote...   127   9e-30
AF016681-6|AAB66175.2|  317|Caenorhabditis elegans Hypothetical ...    29   6.1  

>U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 13 protein.
          Length = 151

 Score =  127 bits (307), Expect = 9e-30
 Identities = 57/72 (79%), Positives = 66/72 (91%)
 Frame = +3

Query: 336 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 515
           I+K+ G+AP+LPEDLY+L+KKAVA+RKHLER+RKD DSK+RLILVESRIHRLARYYKTK 
Sbjct: 74  ILKSKGMAPELPEDLYHLVKKAVAIRKHLERSRKDIDSKYRLILVESRIHRLARYYKTKR 133

Query: 516 VLPPNWKYESST 551
            LPP WKYES T
Sbjct: 134 QLPPTWKYESGT 145



 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 41/60 (68%), Positives = 51/60 (85%)
 Frame = +2

Query: 155 SALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILR 334
           SA+PYRRSVP+W K+TA++V++QI K+ KKGL PSQIGV+LRDSHGV QVR + G KI R
Sbjct: 14  SAIPYRRSVPSWQKMTAEEVQDQIVKMAKKGLRPSQIGVILRDSHGVGQVRRLAGNKIFR 73


>AF016681-6|AAB66175.2|  317|Caenorhabditis elegans Hypothetical
           protein F22E5.11 protein.
          Length = 317

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 416 LSHCNSFLDQVVKILR*VRS*THCLHDXGGSFCQLRILLGQLHVNPSALHQF 261
           +S C  FL+ V  +LR V      +    G+  +L  L+GQL +    L +F
Sbjct: 260 ISKCREFLEAVEDVLRFVEGNIDPISSTAGNIIRLLQLVGQLRIFQDYLGRF 311


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,365,603
Number of Sequences: 27780
Number of extensions: 236966
Number of successful extensions: 480
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)