Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_H19
         (913 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   0.33 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   3.3  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 701 PPPPPPP 721
           PPPPPPP
Sbjct: 731 PPPPPPP 737



 Score = 23.0 bits (47), Expect(2) = 0.33
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 698 NPPPPPPP 721
           N PPPPPP
Sbjct: 729 NAPPPPPP 736



 Score = 22.6 bits (46), Expect = 4.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 759 NXPPPPXPP 785
           N PPPP PP
Sbjct: 729 NAPPPPPPP 737



 Score = 21.4 bits (43), Expect(2) = 0.33
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = +2

Query: 701 PPPPPPPXXRXGLXLSCXXQXPP 769
           PPPPPP        +    + PP
Sbjct: 732 PPPPPPRVESFAETVRTVSKIPP 754


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/42 (30%), Positives = 16/42 (38%)
 Frame = +1

Query: 592 PPPRXXXPSPXVXPXHPRXXHHRXXPPXPNPLXXPXPPPTPP 717
           P P    P P + P      ++   PP P     P PP  PP
Sbjct: 153 PNPSIIDPGPALPPTGFLCNNY---PPLPQVPPLPLPPIFPP 191



 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +2

Query: 593 HPPAXXXPPPPXPPXTP 643
           +PP    PP P PP  P
Sbjct: 174 YPPLPQVPPLPLPPIFP 190


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,166
Number of Sequences: 336
Number of extensions: 2391
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25444518
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)