Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_H19
(913 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 42 2e-04
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 41 3e-04
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 0.070
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 32 0.098
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 30 0.40
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.40
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.92
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 1.6
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.7
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 3.7
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 27 4.9
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 4.9
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 4.9
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 24 6.2
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 24 6.3
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 26 6.5
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 8.5
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 41.5 bits (93), Expect = 2e-04
Identities = 22/57 (38%), Positives = 22/57 (38%)
Frame = +2
Query: 614 PPPPXPPXTPGXGTTAXGPXXPTLYXXXNPPPPPPPXXRXGLXLSCXXQXPPPPPSP 784
PPPP P A P P PPPPPPP G PPPPP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAG-----AGPPPPPPPPP 783
Score = 37.1 bits (82), Expect = 0.003
Identities = 19/47 (40%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Frame = +2
Query: 596 PPAXXXPPP-----PXPPXTPGXGTTAXGPXXPTLYXXXNPPPPPPP 721
PPA P P P PP P G P P + PPPPPPP
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 26.2 bits (55), Expect = 6.5
Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Frame = +2
Query: 698 NPPPPPPPXXRXGLXLSCXXQXPPPPPSP---XXXKKXXXXXXXXAXPXPPP 844
+PPPPPP + P PPP+P A P PPP
Sbjct: 731 SPPPPPPAVI---VPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 40.7 bits (91), Expect = 3e-04
Identities = 33/114 (28%), Positives = 40/114 (35%), Gaps = 16/114 (14%)
Frame = +2
Query: 599 PAXXXP-PPPXPPXTPGX-GTTAXGPXXPTLYXXXNP-------PPPPPPXXRXGLX-LS 748
P+ P PPP PP + G + P P NP PP PPP R L+
Sbjct: 246 PSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALA 305
Query: 749 CXXQXPPPPPSPXXXKKXXXXXXXXA------XPXPPPXGXXLSXIIXPPXXXS 892
+ PPPPP P + + P PPP I PP S
Sbjct: 306 ANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRS 359
Score = 37.9 bits (84), Expect = 0.002
Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Frame = +2
Query: 614 PPPPXPPXTPGXGTTAXGPXXPTLYXXXNPPPPPPPXXRXG--LXLSCXXQXPPPPPSP 784
PPPP PP G G PPPPPPP + L + PPPP P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSL---PPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 33.1 bits (72), Expect = 0.056
Identities = 34/136 (25%), Positives = 37/136 (27%), Gaps = 7/136 (5%)
Frame = +2
Query: 515 PXXTPXXXKNKXPPFFXRXXXRXXGXHPPAXXXPPPPXPPXTPGXGTTAXGPXXPTLYXX 694
P P PP +P PP PP + A
Sbjct: 255 PIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKK----- 309
Query: 695 XNPPPPPPPXXRX------GLXLS-CXXQXPPPPPSPXXXKKXXXXXXXXAXPXPPPXGX 853
PPPPPPP R G S PPPPP + P PPP
Sbjct: 310 -RPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRS 368
Query: 854 XLSXIIXPPXXXSVXA 901
S PP S A
Sbjct: 369 APSTGRQPPPLSSSRA 384
Score = 31.5 bits (68), Expect = 0.17
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = +2
Query: 596 PPAXXXPPPPXPPXTPGXGTTAXGPXXPTLYXXXNPPPPPP 718
P PPPP P P G P + NPP PPP
Sbjct: 355 PQGRSAPPPPPPRSAPSTGRQP--PPLSSSRAVSNPPAPPP 393
Score = 31.1 bits (67), Expect = 0.23
Identities = 22/86 (25%), Positives = 25/86 (29%), Gaps = 3/86 (3%)
Frame = +2
Query: 596 PPAXXXPPPPXPPX-TPGXGTTAXGPXXPTLYXXXNPPP--PPPPXXRXGLXLSCXXQXP 766
PP P PP P A P P + PP PP P + +
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSK 289
Query: 767 PPPPSPXXXKKXXXXXXXXAXPXPPP 844
PP P P P PPP
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPP 315
Score = 29.5 bits (63), Expect = 0.69
Identities = 17/54 (31%), Positives = 17/54 (31%)
Frame = +2
Query: 617 PPPXPPXTPGXGTTAXGPXXPTLYXXXNPPPPPPPXXRXGLXLSCXXQXPPPPP 778
PP PP PG A P PP P PP S PP P
Sbjct: 388 PPAPPPAIPGRSAPAL-PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLP 440
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/63 (26%), Positives = 20/63 (31%)
Frame = +2
Query: 596 PPAXXXPPPPXPPXTPGXGTTAXGPXXPTLYXXXNPPPPPPPXXRXGLXLSCXXQXPPPP 775
PP+ PP P + P P L PP P L PPP
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPA 479
Query: 776 PSP 784
P+P
Sbjct: 480 PAP 482
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +2
Query: 596 PPAXXXPPPPXPPXTPGXGTTAXGPXXPTLYXXXNPPPPPPP 721
PP PPP PP + +T P + + PP PPP
Sbjct: 354 PPQGRSAPPPPPPRSAP--STGRQPPPLSSSRAVSNPPAPPP 393
Score = 27.9 bits (59), Expect = 2.1
Identities = 18/60 (30%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Frame = +2
Query: 614 PPPPXPPXTPGXGTTAXGPXXPTLYXXXNPPPPP-PPXXRXGLXLSCXXQXPP--PPPSP 784
PP P PP P + P P P PP PP L P PP +P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/63 (25%), Positives = 20/63 (31%)
Frame = +2
Query: 596 PPAXXXPPPPXPPXTPGXGTTAXGPXXPTLYXXXNPPPPPPPXXRXGLXLSCXXQXPPPP 775
PPA P P T+ P + PP PP L + P PP
Sbjct: 392 PPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451
Query: 776 PSP 784
+P
Sbjct: 452 SAP 454
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.0 bits (52), Expect(3) = 0.070
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +2
Query: 677 PTLYXXXNPPPPPP 718
PT+ PPPPPP
Sbjct: 899 PTIITHPTPPPPPP 912
Score = 23.8 bits (49), Expect(3) = 0.070
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 701 PPPPPPP 721
PPPPPPP
Sbjct: 945 PPPPPPP 951
Score = 20.6 bits (41), Expect(3) = 0.070
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = +2
Query: 764 PPPPPSP 784
PPPPP P
Sbjct: 947 PPPPPPP 953
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 32.3 bits (70), Expect = 0.098
Identities = 19/52 (36%), Positives = 20/52 (38%)
Frame = -3
Query: 743 GXGRXXXXXGGVGGGXGXXRGLGXGGXXRWCXXRGCXGXTXGEGXXXRGGGR 588
G G GG GGG G RG G GG RG G RGG +
Sbjct: 17 GRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAK 68
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = -3
Query: 716 GGVGGGXGXXRGLGXGGXXRWCXXRGCXGXTXGEGXXXRGGGR 588
GG GG G RG GG RG G + G +GG +
Sbjct: 30 GGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGGAK 72
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 30.3 bits (65), Expect = 0.40
Identities = 21/78 (26%), Positives = 23/78 (29%)
Frame = +2
Query: 551 PPFFXRXXXRXXGXHPPAXXXPPPPXPPXTPGXGTTAXGPXXPTLYXXXNPPPPPPPXXR 730
PP F P+ PPPP PP P A P Y P
Sbjct: 168 PPSFQPPSAAAPATSLPSDYNPPPP-PPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPT 226
Query: 731 XGLXLSCXXQXPPPPPSP 784
+ PPPPP P
Sbjct: 227 YTPKQADPLPAPPPPPPP 244
Score = 29.5 bits (63), Expect = 0.69
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +2
Query: 596 PPAXXXPPPPXPPXTPGXGTTAXGPXXPTLYXXXNPPPPPPP 721
P + PPP P + T+ P+ Y NPPPPPPP
Sbjct: 161 PNSMVSPPPSFQPPSAAAPATSL----PSDY---NPPPPPPP 195
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Frame = +2
Query: 614 PPPPXPPXTPGXGTTAXGPXXPT-----LYXXXNPPPPP 715
PPPP PP P T P+ L N PPPP
Sbjct: 238 PPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPP 276
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/31 (38%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Frame = +2
Query: 698 NPPPP--PPPXXRXGLXLSCXXQXPPPPPSP 784
+PPP PP L PPPPP P
Sbjct: 166 SPPPSFQPPSAAAPATSLPSDYNPPPPPPPP 196
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.3 bits (65), Expect = 0.40
Identities = 16/34 (47%), Positives = 16/34 (47%)
Frame = +2
Query: 698 NPPPPPPPXXRXGLXLSCXXQXPPPPPSPXXXKK 799
NPPPPPP G PPPPP P KK
Sbjct: 8 NPPPPPP---PPGFE---PPSQPPPPPPPGYVKK 35
Score = 26.2 bits (55), Expect = 6.5
Identities = 16/42 (38%), Positives = 17/42 (40%)
Frame = +2
Query: 596 PPAXXXPPPPXPPXTPGXGTTAXGPXXPTLYXXXNPPPPPPP 721
PP PPPP P P P+ PPPPPPP
Sbjct: 5 PPGNPPPPPPPPGFEP-----------PS-----QPPPPPPP 30
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +3
Query: 732 PAXPSRVXXNXPPPPXPPXXXKKXR 806
P P + PPPP PP KK +
Sbjct: 13 PPPPGFEPPSQPPPPPPPGYVKKRK 37
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.1 bits (62), Expect = 0.92
Identities = 16/48 (33%), Positives = 18/48 (37%)
Frame = +2
Query: 596 PPAXXXPPPPXPPXTPGXGTTAXGPXXPTLYXXXNPPPPPPPXXRXGL 739
PP PPPP P P +A P P + P P P R L
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPPLPA----SSAPSVPNPGDRSAL 1752
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/40 (30%), Positives = 14/40 (35%)
Frame = +1
Query: 598 PRXXXPSPXVXPXHPRXXHHRXXPPXPNPLXXPXPPPTPP 717
P +P V P P P P+ P PP PP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPP 1722
Score = 26.6 bits (56), Expect = 4.9
Identities = 18/64 (28%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Frame = +2
Query: 596 PPAXXXPPPPXPPXTPGXGTTAXGP-XXPTLYXXXNPPPPPPPXXRXGLXLSCXXQXPPP 772
PPA P P PG T A P P + PP P + Q PP
Sbjct: 1448 PPAPMHAVAPVQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPPS 1507
Query: 773 PPSP 784
+P
Sbjct: 1508 SVAP 1511
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/62 (25%), Positives = 19/62 (30%)
Frame = +2
Query: 599 PAXXXPPPPXPPXTPGXGTTAXGPXXPTLYXXXNPPPPPPPXXRXGLXLSCXXQXPPPPP 778
P+ PP P P P P P PPP P + PP P
Sbjct: 1027 PSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVP 1086
Query: 779 SP 784
+P
Sbjct: 1087 AP 1088
Score = 28.3 bits (60), Expect = 1.6
Identities = 23/90 (25%), Positives = 26/90 (28%), Gaps = 7/90 (7%)
Frame = +2
Query: 596 PPAXXXPPPPXP----PXTPGXGTTAXGPXXPTLYXXXNPPP---PPPPXXRXGLXLSCX 754
P PP P P P P + P PPP PP P G+
Sbjct: 1153 PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212
Query: 755 XQXPPPPPSPXXXKKXXXXXXXXAXPXPPP 844
PP P+P A P P P
Sbjct: 1213 PSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/51 (29%), Positives = 15/51 (29%)
Frame = +1
Query: 592 PPPRXXXPSPXVXPXHPRXXHHRXXPPXPNPLXXPXPPPTPPXXXXXRPXP 744
PPP P P P PP P P P P P P P
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/61 (26%), Positives = 17/61 (27%)
Frame = +2
Query: 596 PPAXXXPPPPXPPXTPGXGTTAXGPXXPTLYXXXNPPPPPPPXXRXGLXLSCXXQXPPPP 775
PP P P PP +P P P P P S PP P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198
Query: 776 P 778
P
Sbjct: 199 P 199
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 27.1 bits (57), Expect = 3.7
Identities = 16/52 (30%), Positives = 19/52 (36%)
Frame = +2
Query: 620 PPXPPXTPGXGTTAXGPXXPTLYXXXNPPPPPPPXXRXGLXLSCXXQXPPPP 775
PP P P GT + + N PPP R + Q PPPP
Sbjct: 108 PPKEPALPSRGTPSLPSRPGSRPSVLNQEQVPPPPVRPNV----MSQMPPPP 155
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.1 bits (57), Expect = 3.7
Identities = 16/60 (26%), Positives = 22/60 (36%)
Frame = +2
Query: 599 PAXXXPPPPXPPXTPGXGTTAXGPXXPTLYXXXNPPPPPPPXXRXGLXLSCXXQXPPPPP 778
P P P +P G ++ P + + PPPPP + S PPPP
Sbjct: 872 PMRRAAPSMAPVRSPFPGASSAQPAAMSRTSSVSTLPPPPP--TASMTASAPAIASPPPP 929
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/40 (32%), Positives = 16/40 (40%)
Frame = +2
Query: 599 PAXXXPPPPXPPXTPGXGTTAXGPXXPTLYXXXNPPPPPP 718
P P P P G+++ G P L PP PPP
Sbjct: 1009 PDHLVAPRVKPLLPPRSGSSSSGVPAPNLTPVNVPPTPPP 1048
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/40 (30%), Positives = 15/40 (37%)
Frame = +2
Query: 596 PPAXXXPPPPXPPXTPGXGTTAXGPXXPTLYXXXNPPPPP 715
P A P PP P P + P P + + P PP
Sbjct: 569 PEALSVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPP 608
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/40 (30%), Positives = 15/40 (37%)
Frame = +2
Query: 596 PPAXXXPPPPXPPXTPGXGTTAXGPXXPTLYXXXNPPPPP 715
P A P PP P P + P P + + P PP
Sbjct: 599 PEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPP 638
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/40 (30%), Positives = 15/40 (37%)
Frame = +2
Query: 596 PPAXXXPPPPXPPXTPGXGTTAXGPXXPTLYXXXNPPPPP 715
P A P PP P P + P P + + P PP
Sbjct: 629 PEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPP 668
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/44 (31%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Frame = +2
Query: 593 HPPAXXXPPPPXP-PXTPGXGTTAXGPXXPTLYXXXNPPPPPPP 721
+P A PPP P P T P PPP P P
Sbjct: 360 YPQAAFPPPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPAP 403
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 23.8 bits (49), Expect(2) = 6.2
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 701 PPPPPPP 721
PPPPPPP
Sbjct: 371 PPPPPPP 377
Score = 20.6 bits (41), Expect(2) = 6.2
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = +2
Query: 614 PPPPXPP 634
PPPP PP
Sbjct: 370 PPPPPPP 376
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 23.8 bits (49), Expect(2) = 6.3
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 701 PPPPPPP 721
PPPPPPP
Sbjct: 306 PPPPPPP 312
Score = 23.8 bits (49), Expect(2) = 6.3
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 701 PPPPPPP 721
PPPPPPP
Sbjct: 307 PPPPPPP 313
Score = 20.6 bits (41), Expect(2) = 6.3
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = +2
Query: 614 PPPPXPP 634
PPPP PP
Sbjct: 306 PPPPPPP 312
Score = 20.6 bits (41), Expect(2) = 6.3
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = +2
Query: 764 PPPPPSP 784
PPPPP P
Sbjct: 308 PPPPPPP 314
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 26.2 bits (55), Expect = 6.5
Identities = 17/67 (25%), Positives = 21/67 (31%), Gaps = 5/67 (7%)
Frame = +2
Query: 599 PAXXXPPPPXPPXTPGXGTTAXGP-----XXPTLYXXXNPPPPPPPXXRXGLXLSCXXQX 763
P PPPP P P + P PT+ + P P + Q
Sbjct: 107 PPSQLPPPPQPQSHPNVTVISASPARAIEQQPTILSSTDSNIPRPGTVKSSASPFVPNQN 166
Query: 764 PPPPPSP 784
P PP P
Sbjct: 167 PSAPPPP 173
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 25.8 bits (54), Expect = 8.5
Identities = 17/51 (33%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Frame = +2
Query: 593 HPPAXXXPPPPXPPXTPGXGTTAXGPXXPTLYXXXNP---PPPPPPXXRXG 736
HP A P P PG G P + NP PP PPP G
Sbjct: 144 HPAATA--PSEFMPSIPGFGNLPNPAMPPIPFLPFNPAAQPPFPPPFKMRG 192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,698,513
Number of Sequences: 5004
Number of extensions: 26029
Number of successful extensions: 329
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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