Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_H12
(961 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ... 29 0.97
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar... 27 3.0
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar... 27 3.9
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 5.2
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 26 6.9
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 26 9.1
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy... 26 9.1
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 9.1
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 26 9.1
>SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 29.1 bits (62), Expect = 0.97
Identities = 15/65 (23%), Positives = 30/65 (46%)
Frame = +3
Query: 387 VPQIMSIREKRSAEGIYIQAMLMEIIGFTIMSLYNYTNKYNIMTYMEYPIILFQVYVMFY 566
+PQI+ +S EG+ +L ++ +S+YN + NI ++ + + F+
Sbjct: 35 IPQIIKNYRAKSTEGLDTLFILSWVVASIPLSVYNQVQELNIALKVQPELFQALAFTTFF 94
Query: 567 FVLKY 581
L Y
Sbjct: 95 QCLYY 99
>SPAC17C9.10 |stm1||G-protein coupled receptor
Stm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 27.5 bits (58), Expect = 3.0
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Frame = +3
Query: 384 KVPQIMSIREKRSAEGIYIQAMLMEIIG---FTIMSLYNYTNKYNIMTYMEYPIIL---- 542
++PQI+ + +S EG+ I ++ +G + L + Y TY P IL
Sbjct: 193 RIPQIIKNHKAKSTEGLSIIFFVLASVGNTSYAFSILVFPASDYLNYTYANLPWILGAFS 252
Query: 543 --FQVYVMFYFVLKYKN 587
F +FY +KY+N
Sbjct: 253 TIFLDIYIFYQFIKYRN 269
>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
lipase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 27.1 bits (57), Expect = 3.9
Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -3
Query: 746 DTIYISHFSESAQWRAXRHQIGENLFRQ*IHDETEHRSKV*SDHYGNN-WKVQHV 585
D +YI+ + WR ++ + L ++E + R++ ++GN+ WK+ V
Sbjct: 96 DRLYINCYEYFIVWRGEARRLRKLLQEAKTYEEWKERARALDKYFGNDEWKLDPV 150
>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 430
Score = 26.6 bits (56), Expect = 5.2
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -1
Query: 460 ISISMA*IYIPSADLFSRMDIICGTLRNRDDSIVIVLSALAKISIK 323
IS+S P ++L RMDII R+D I S+L IK
Sbjct: 98 ISLSSVRASFPISELGIRMDIIKARAEPREDEIRASFSSLVNKEIK 143
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 26.2 bits (55), Expect = 6.9
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -3
Query: 752 DYDTIYISHFSESAQWRAXRH----QIGENLFRQ*IHDETE 642
D D YI E+++W + RH ++GE+++ +D+ E
Sbjct: 1859 DQDRSYIGFHFENSKWESLRHVRVNRVGEHIYPLISYDQDE 1899
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 25.8 bits (54), Expect = 9.1
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -1
Query: 121 SNFLRTRTSTVLSIVAPISASLNEGQILRIPYSESVXKI 5
SN L+ + +LS++AP+ + + + +PY + K+
Sbjct: 85 SNVLQAKFPQILSVLAPVVNNAETNKTVLLPYLNVLEKL 123
>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 25.8 bits (54), Expect = 9.1
Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Frame = +3
Query: 465 GFTIMSLYNYTNKYNIMTYMEYPIILFQVYVMFYF---VLKYKNMLNLPIIPVMVASYFA 635
GF + ++ Y + +NI+ + P+I+F + ++ + I+ V+ A
Sbjct: 113 GFILNMVHMYVHVFNILILLLAPVIIFTAEMSMMIQVRIICAHDRKTQRIMTVISACLTV 172
Query: 636 SVFGFVMDLLPKQVLSYLVPXCTPLSGFAKVTYIYGIIIGR 758
V F + + +Q+ YL+ TPLS V Y + I +
Sbjct: 173 LVLAFWITNMCQQI-QYLL-WLTPLSSKTIVGYSWPYFIAK 211
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 9.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 427 SADLFSRMDIICGTLRNRDDSIVIVLSALAKISIKY 320
+ DL SR+DI L+ RDD + V S L + Y
Sbjct: 408 NTDLRSRVDISESKLKKRDDKLKRVSSQLEHLKHNY 443
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 163 SQAVVYAFKSNSKCSNFLRTRTSTVLSIVAPISASL 56
S Y+ ++ SN+ T TS+V IV+P + L
Sbjct: 522 SNVTEYSSAYSASLSNYYATATSSVFQIVSPTATPL 557
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,324,219
Number of Sequences: 5004
Number of extensions: 72240
Number of successful extensions: 173
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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