Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_H12
         (961 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0368 + 17351199-17351351,17352166-17352243,17353774-173539...    38   0.012
02_01_0389 - 2816878-2817390,2817552-2817670,2817803-2817865,281...    34   0.15 
01_06_1610 - 38625427-38625726,38625814-38625885,38626001-386261...    29   5.5  
08_02_0087 + 12163706-12163757,12164877-12164961,12165039-121651...    28   9.6  
06_01_0946 + 7289182-7289226,7291366-7291441,7291542-7291655,729...    28   9.6  
01_05_0635 - 23847255-23847287,23847397-23848083,23848178-238485...    28   9.6  

>07_03_0368 +
           17351199-17351351,17352166-17352243,17353774-17353927,
           17353997-17354019,17354242-17354319,17354407-17354466,
           17354745-17354805,17355080-17355243
          Length = 256

 Score = 37.9 bits (84), Expect = 0.012
 Identities = 19/75 (25%), Positives = 35/75 (46%)
 Frame = +3

Query: 324 LIEIFANALSTMTILSSLFLKVPQIMSIREKRSAEGIYIQAMLMEIIGFTIMSLYNYTNK 503
           L+ + +  L    + +S   K+PQI+ I +  S  G+ + +  +E++G+TI   Y     
Sbjct: 54  LLRLMSKILGYHVVAASAIGKLPQILKILKHGSVRGLSVASFELEVVGYTIALAYCIHKG 113

Query: 504 YNIMTYMEYPIILFQ 548
                Y E   +L Q
Sbjct: 114 LPFSAYGELAFLLIQ 128


>02_01_0389 -
           2816878-2817390,2817552-2817670,2817803-2817865,
           2818229-2818355,2818607-2818827,2818973-2819136,
           2819766-2819846,2820657-2820728,2820857-2820995,
           2821206-2821690,2821995-2822550,2822610-2822666,
           2822705-2822774
          Length = 888

 Score = 34.3 bits (75), Expect = 0.15
 Identities = 19/70 (27%), Positives = 37/70 (52%)
 Frame = +3

Query: 300 QKMIDVPYLIEIFANALSTMTILSSLFLKVPQIMSIREKRSAEGIYIQAMLMEIIGFTIM 479
           QK I    L  I    ++T+ ++  LFL + +++  ++KR A G   ++ L+E   F+  
Sbjct: 505 QKKIKGSLLSAIIITIVATVALIVVLFLLLRRMLKAKDKRRAAGPTYESALLENREFSYR 564

Query: 480 SLYNYTNKYN 509
            L + TN ++
Sbjct: 565 ELKHITNNFS 574


>01_06_1610 -
           38625427-38625726,38625814-38625885,38626001-38626117,
           38626509-38626674,38626768-38626815,38626889-38626962,
           38627126-38627243,38627332-38627420,38627512-38627687,
           38627785-38627898,38627981-38628051,38628431-38628477,
           38628581-38628721,38629095-38629136
          Length = 524

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
 Frame = -3

Query: 614 YGNNWKVQHVLIFENKVEHYVDLEKYD--RVLHIGHDIILVCIIVER 480
           +G  +KV   L+ +NK+ H+ D  KYD  R+ ++G+D + +  +V R
Sbjct: 78  HGGTYKVLRNLL-KNKLVHH-DATKYDGYRLTYLGYDFLAIKTLVNR 122


>08_02_0087 +
           12163706-12163757,12164877-12164961,12165039-12165107,
           12165757-12165869,12167570-12167681,12167784-12167927,
           12169222-12169396,12169482-12169595,12169734-12169775,
           12171093-12171193,12171515-12171623
          Length = 371

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = -2

Query: 195 CSWTLTRSRGRAKLLSMLSNQIPSAAIFSG 106
           CSW+ T SRG   ++S LS+ +PS+ + +G
Sbjct: 338 CSWS-TASRGCDVVVSALSHLMPSSTVVTG 366


>06_01_0946 +
           7289182-7289226,7291366-7291441,7291542-7291655,
           7291881-7292447,7293047-7293792
          Length = 515

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 11/46 (23%), Positives = 27/46 (58%)
 Frame = -1

Query: 184 VNQIQGQSQAVVYAFKSNSKCSNFLRTRTSTVLSIVAPISASLNEG 47
           + +I    Q+ ++  ++NSK   F     + +L++ +P+SA++ +G
Sbjct: 305 ITRILSARQSSIFLHRNNSKHIPFSMKNITDILTMFSPVSATMADG 350


>01_05_0635 -
           23847255-23847287,23847397-23848083,23848178-23848540,
           23848633-23848725,23848820-23848870,23849031-23849304,
           23849766-23850595
          Length = 776

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 163 SAPGSG*RPRAAVTTHHHH 219
           SAPG G   R  +T HHHH
Sbjct: 24  SAPGRGGARREILTNHHHH 42


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,596,685
Number of Sequences: 37544
Number of extensions: 426993
Number of successful extensions: 996
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2776393380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)