Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_H12
         (961 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41996-4|AAA83473.1|  238|Caenorhabditis elegans Hypothetical pr...    45   9e-05
AF016433-6|AAB65391.1|  335|Caenorhabditis elegans Seven tm rece...    35   0.099
AF025451-4|AAL16306.1|  567|Caenorhabditis elegans Hypothetical ...    32   0.70 
AF025451-3|AAB71200.2|  634|Caenorhabditis elegans Hypothetical ...    32   0.70 
Z72502-9|CAE17688.1|  300|Caenorhabditis elegans Hypothetical pr...    30   2.8  
Z46787-3|CAA86741.1| 1032|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z48809-4|CAB76413.2|  332|Caenorhabditis elegans Hypothetical pr...    29   6.5  
Z83120-9|CAB05589.2|  773|Caenorhabditis elegans Hypothetical pr...    28   8.6  
Z81515-11|CAB04199.2|  773|Caenorhabditis elegans Hypothetical p...    28   8.6  
Z68113-4|CAA92148.2| 1503|Caenorhabditis elegans Hypothetical pr...    28   8.6  
AF011893-1|AAC27124.1|  773|Caenorhabditis elegans maternal-effe...    28   8.6  

>U41996-4|AAA83473.1|  238|Caenorhabditis elegans Hypothetical
           protein F38E1.9 protein.
          Length = 238

 Score = 44.8 bits (101), Expect = 9e-05
 Identities = 30/135 (22%), Positives = 62/135 (45%)
 Frame = +3

Query: 333 IFANALSTMTILSSLFLKVPQIMSIREKRSAEGIYIQAMLMEIIGFTIMSLYNYTNKYNI 512
           + +  L     L S+ L VPQI+ I+  RSA+GI   + L+ ++G    + Y+Y + +  
Sbjct: 32  VLSRGLGFAITLGSILLFVPQILKIQAARSAQGISAASQLLALVGAIGTASYSYRSGFVF 91

Query: 513 MTYMEYPIILFQVYVMFYFVLKYKNMLNLPIIPVMVASYFASVFGFVMDLLPKQVLSYLV 692
             + +   +  Q+ ++   +  +     L +  + + S  A  +G V   +P Q L+ + 
Sbjct: 92  SGWGDSFFVAVQLVIIILQIFLFSGQTMLSVGFLGIVS--AVAYGVVSKSIPMQTLTAVQ 149

Query: 693 PXCTPLSGFAKVTYI 737
               P+   +K+  I
Sbjct: 150 TAGIPIVVVSKLLQI 164


>AF016433-6|AAB65391.1|  335|Caenorhabditis elegans Seven tm
           receptor protein 131 protein.
          Length = 335

 Score = 34.7 bits (76), Expect = 0.099
 Identities = 19/82 (23%), Positives = 37/82 (45%)
 Frame = +3

Query: 468 FTIMSLYNYTNKYNIMTYMEYPIILFQVYVMFYFVLKYKNMLNLPIIPVMVASYFASVFG 647
           + +++   Y   YN +  +  P+++ +  +  Y V+ +  + N+PI   +    F S FG
Sbjct: 42  YLMLAFSLYAILYNYVDIITLPLVVIEKQM--YVVVNHGPIRNVPIFGFLFTCLFGSSFG 99

Query: 648 FVMDLLPKQVLSYLVPXCTPLS 713
             + LL  Q     +  C P S
Sbjct: 100 LCISLLSTQFFYRYLAVCRPKS 121


>AF025451-4|AAL16306.1|  567|Caenorhabditis elegans Hypothetical
           protein C24H12.4b protein.
          Length = 567

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 17/64 (26%), Positives = 35/64 (54%)
 Frame = -1

Query: 475 MVKPIISISMA*IYIPSADLFSRMDIICGTLRNRDDSIVIVLSALAKISIKYGTSIIF*S 296
           M  P+I+I +    +P++D  ++  + CG+    D+    +L A+ K+ +  G SI+F +
Sbjct: 223 MTGPVITIKLTEGDLPNSDQLTQYQLTCGS----DEERFAILVAMFKLKLIVGRSILFVN 278

Query: 295 IFNR 284
             +R
Sbjct: 279 TIDR 282


>AF025451-3|AAB71200.2|  634|Caenorhabditis elegans Hypothetical
           protein C24H12.4a protein.
          Length = 634

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 17/64 (26%), Positives = 35/64 (54%)
 Frame = -1

Query: 475 MVKPIISISMA*IYIPSADLFSRMDIICGTLRNRDDSIVIVLSALAKISIKYGTSIIF*S 296
           M  P+I+I +    +P++D  ++  + CG+    D+    +L A+ K+ +  G SI+F +
Sbjct: 290 MTGPVITIKLTEGDLPNSDQLTQYQLTCGS----DEERFAILVAMFKLKLIVGRSILFVN 345

Query: 295 IFNR 284
             +R
Sbjct: 346 TIDR 349


>Z72502-9|CAE17688.1|  300|Caenorhabditis elegans Hypothetical
           protein C08B6.12 protein.
          Length = 300

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = +3

Query: 315 VPYLIEIFANALST-MTILSSLFLKVPQIMS-IREKRSAEGIYIQAMLMEIIGFTIMSLY 488
           + Y I IF   +S  M IL  +F+K+ ++ S +R K     + I ++++ ++  T   LY
Sbjct: 173 ISYFIHIFLPWVSVFMNILVFIFIKLRKMKSQVRRKSGERTLVINSLVVSLL-LTANYLY 231

Query: 489 NY 494
           NY
Sbjct: 232 NY 233


>Z46787-3|CAA86741.1| 1032|Caenorhabditis elegans Hypothetical
           protein C16C10.3 protein.
          Length = 1032

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 546 QVYVMFYFVLKYKNMLNLPIIPVMVASYFASVFGFVMDLL 665
           +V V  YF+L+Y   L  P +P++V+  F     F M+LL
Sbjct: 438 EVTVAEYFLLQYNIKLKYPRLPLVVSKRFKHESFFPMELL 477


>Z48809-4|CAB76413.2|  332|Caenorhabditis elegans Hypothetical
           protein T01E8.7 protein.
          Length = 332

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 596 PSNYSRNGRFILCFCVRFRHGSIAETSSLLFGAVLHATERI 718
           P     N  F+L   VR  H S+  TSSL+ G +++   R+
Sbjct: 173 PCEVDENRFFVLALDVRVTHYSVIITSSLIEGQIIYFVIRL 213


>Z83120-9|CAB05589.2|  773|Caenorhabditis elegans Hypothetical
           protein R06A4.7 protein.
          Length = 773

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 376 RDDSIVIVLSALAKISIKYGTSIIF*SIFNRFNPFCTW*PQY 251
           ++  I  + S +AK+ I+ G  I+   +FN + PFC +  +Y
Sbjct: 380 KEVKIYFMKSRIAKMPIEDGALIVNIYVFNTYIPFCEFVKKY 421


>Z81515-11|CAB04199.2|  773|Caenorhabditis elegans Hypothetical
           protein R06A4.7 protein.
          Length = 773

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 376 RDDSIVIVLSALAKISIKYGTSIIF*SIFNRFNPFCTW*PQY 251
           ++  I  + S +AK+ I+ G  I+   +FN + PFC +  +Y
Sbjct: 380 KEVKIYFMKSRIAKMPIEDGALIVNIYVFNTYIPFCEFVKKY 421


>Z68113-4|CAA92148.2| 1503|Caenorhabditis elegans Hypothetical protein
            E03G2.2 protein.
          Length = 1503

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 468  FTIMSLYNYTNKYNIMTYMEYPIILFQVYVMFYFVLKY 581
            F +M+L N T      T   +  I+  V+++++FVLKY
Sbjct: 1064 FLVMALINMTVLIVSYTTPLFIAIIIPVFIIYFFVLKY 1101


>AF011893-1|AAC27124.1|  773|Caenorhabditis elegans maternal-effect
           sterile 2 protein.
          Length = 773

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 376 RDDSIVIVLSALAKISIKYGTSIIF*SIFNRFNPFCTW*PQY 251
           ++  I  + S +AK+ I+ G  I+   +FN + PFC +  +Y
Sbjct: 380 KEVKIYFMKSRIAKMPIEDGALIVNIYVFNTYIPFCEFVKKY 421


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,096,751
Number of Sequences: 27780
Number of extensions: 393704
Number of successful extensions: 983
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2496624284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)