Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_H11
         (909 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    26   0.35 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   3.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   3.3  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   7.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   7.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   7.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   7.6  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 265 LVQICKMAQVYPHPAPEGCTSASSESAPSDQPIYPDTG 378
           L  + ++  VYP+     C   + E++ SD P +P  G
Sbjct: 182 LETLSQLMDVYPNNDGTKCLVVTDEASISDAPFFPHRG 219


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +1

Query: 295 YPHP--APEGCTSASSESAPSDQPIYPDTG 378
           YP+P  +PE    A+S   PS  P+ P  G
Sbjct: 172 YPYPILSPEMSQVAASWHTPSMYPLSPGAG 201


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +1

Query: 295 YPHP--APEGCTSASSESAPSDQPIYPDTG 378
           YP+P  +PE    A+S   PS  P+ P  G
Sbjct: 64  YPYPILSPEMSQVAASWHTPSMYPLSPGAG 93


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 247 ALTNGKVLWPLLEER 203
           A   G V+WP++E+R
Sbjct: 236 AQATGFVVWPIIEQR 250


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 247 ALTNGKVLWPLLEER 203
           A   G V+WP++E+R
Sbjct: 236 AQATGFVVWPIIEQR 250


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 247 ALTNGKVLWPLLEER 203
           A   G V+WP++E+R
Sbjct: 236 AQATGFVVWPIIEQR 250


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 247 ALTNGKVLWPLLEER 203
           A   G V+WP++E+R
Sbjct: 236 AQATGFVVWPIIEQR 250


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,101
Number of Sequences: 336
Number of extensions: 2321
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25341085
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)