Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_H11
         (909 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   153   3e-38
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    38   0.003
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   8.5  
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom...    26   8.5  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  153 bits (371), Expect = 3e-38
 Identities = 78/147 (53%), Positives = 96/147 (65%), Gaps = 2/147 (1%)
 Frame = +2

Query: 200 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 379
           NPLF  RP++F IGQ IQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF +TLD
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83

Query: 380 KTTAKGLFKILEKYRPET-XXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLV 556
           K TA  +FK+L KYRPET                          +P  ++ G N V  L+
Sbjct: 84  KNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALI 143

Query: 557 EKKKAQLVVIAHDVDPIELVLFLP-LC 634
           E KKA+LV+IA DVDPIELV+FLP LC
Sbjct: 144 EAKKAKLVLIASDVDPIELVVFLPALC 170


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 15/37 (40%), Positives = 25/37 (67%)
 Frame = +2

Query: 521 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPL 631
           +R G N  TK + +  ++ +V+A D +PIE++L LPL
Sbjct: 32  LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPL 68


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 314 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 415
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 517 YHPIRHKHSHQAGREEEGAACGHR 588
           + P  HKH++    +EE  +C HR
Sbjct: 149 FQPNGHKHTYAEMTDEERNSCSHR 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,170,278
Number of Sequences: 5004
Number of extensions: 37955
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)