Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_H11
(909 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X82782-1|CAA58023.1| 271|Drosophila melanogaster ribosomal prot... 202 5e-52
AY089570-1|AAL90308.1| 271|Drosophila melanogaster RE05022p pro... 202 5e-52
AE014298-903|AAF46169.1| 271|Drosophila melanogaster CG3314-PD,... 202 5e-52
AE014298-902|AAN09172.1| 271|Drosophila melanogaster CG3314-PC,... 202 5e-52
AE014298-901|AAN09170.1| 271|Drosophila melanogaster CG3314-PA,... 202 5e-52
AF208396-1|AAF20209.1| 127|Drosophila melanogaster Hoi-polloi p... 42 0.001
AE014134-1677|AAF52798.2| 127|Drosophila melanogaster CG3949-PA... 42 0.001
M89628-1|AAB00734.1| 661|Drosophila melanogaster retinal degene... 33 0.71
BT015959-1|AAV36844.1| 603|Drosophila melanogaster RH46370p pro... 33 0.71
AE014296-3312|AAF49044.2| 603|Drosophila melanogaster CG6571-PA... 33 0.71
AE014296-3311|AAO41219.1| 661|Drosophila melanogaster CG6571-PD... 33 0.71
AE014296-3310|AAO41218.1| 661|Drosophila melanogaster CG6571-PC... 33 0.71
AE014296-3309|AAO41217.1| 661|Drosophila melanogaster CG6571-PB... 33 0.71
AY058343-1|AAL13572.1| 403|Drosophila melanogaster GH11867p pro... 29 8.8
AE014297-1960|AAN13634.1| 403|Drosophila melanogaster CG31344-P... 29 8.8
>X82782-1|CAA58023.1| 271|Drosophila melanogaster ribosomal protein
L7a protein.
Length = 271
Score = 202 bits (493), Expect = 5e-52
Identities = 98/146 (67%), Positives = 112/146 (76%), Gaps = 1/146 (0%)
Frame = +2
Query: 200 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 379
N LFEKRPKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLD
Sbjct: 34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93
Query: 380 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 559
KTTA LFK+LEKYRPE+ +P+ + +GTNTVTKL+E
Sbjct: 94 KTTAVKLFKLLEKYRPESALAKNVRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIE 153
Query: 560 KKKAQLVVIAHDVDPIELVLFLP-LC 634
+KKAQLVVIAHDVDP+ELVLFLP LC
Sbjct: 154 QKKAQLVVIAHDVDPLELVLFLPALC 179
>AY089570-1|AAL90308.1| 271|Drosophila melanogaster RE05022p
protein.
Length = 271
Score = 202 bits (493), Expect = 5e-52
Identities = 98/146 (67%), Positives = 112/146 (76%), Gaps = 1/146 (0%)
Frame = +2
Query: 200 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 379
N LFEKRPKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLD
Sbjct: 34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93
Query: 380 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 559
KTTA LFK+LEKYRPE+ +P+ + +GTNTVTKL+E
Sbjct: 94 KTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIE 153
Query: 560 KKKAQLVVIAHDVDPIELVLFLP-LC 634
+KKAQLVVIAHDVDP+ELVLFLP LC
Sbjct: 154 QKKAQLVVIAHDVDPLELVLFLPALC 179
>AE014298-903|AAF46169.1| 271|Drosophila melanogaster CG3314-PD,
isoform D protein.
Length = 271
Score = 202 bits (493), Expect = 5e-52
Identities = 98/146 (67%), Positives = 112/146 (76%), Gaps = 1/146 (0%)
Frame = +2
Query: 200 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 379
N LFEKRPKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLD
Sbjct: 34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93
Query: 380 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 559
KTTA LFK+LEKYRPE+ +P+ + +GTNTVTKL+E
Sbjct: 94 KTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIE 153
Query: 560 KKKAQLVVIAHDVDPIELVLFLP-LC 634
+KKAQLVVIAHDVDP+ELVLFLP LC
Sbjct: 154 QKKAQLVVIAHDVDPLELVLFLPALC 179
>AE014298-902|AAN09172.1| 271|Drosophila melanogaster CG3314-PC,
isoform C protein.
Length = 271
Score = 202 bits (493), Expect = 5e-52
Identities = 98/146 (67%), Positives = 112/146 (76%), Gaps = 1/146 (0%)
Frame = +2
Query: 200 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 379
N LFEKRPKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLD
Sbjct: 34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93
Query: 380 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 559
KTTA LFK+LEKYRPE+ +P+ + +GTNTVTKL+E
Sbjct: 94 KTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIE 153
Query: 560 KKKAQLVVIAHDVDPIELVLFLP-LC 634
+KKAQLVVIAHDVDP+ELVLFLP LC
Sbjct: 154 QKKAQLVVIAHDVDPLELVLFLPALC 179
>AE014298-901|AAN09170.1| 271|Drosophila melanogaster CG3314-PA,
isoform A protein.
Length = 271
Score = 202 bits (493), Expect = 5e-52
Identities = 98/146 (67%), Positives = 112/146 (76%), Gaps = 1/146 (0%)
Frame = +2
Query: 200 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 379
N LFEKRPKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLD
Sbjct: 34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93
Query: 380 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 559
KTTA LFK+LEKYRPE+ +P+ + +GTNTVTKL+E
Sbjct: 94 KTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIE 153
Query: 560 KKKAQLVVIAHDVDPIELVLFLP-LC 634
+KKAQLVVIAHDVDP+ELVLFLP LC
Sbjct: 154 QKKAQLVVIAHDVDPLELVLFLPALC 179
>AF208396-1|AAF20209.1| 127|Drosophila melanogaster Hoi-polloi
protein.
Length = 127
Score = 41.9 bits (94), Expect = 0.001
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +2
Query: 515 NTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPL 631
N +R G N TK + + A +VV+A D +PIE++L LPL
Sbjct: 32 NQLRKGANEATKTLNRGLADIVVLAGDAEPIEILLHLPL 70
>AE014134-1677|AAF52798.2| 127|Drosophila melanogaster CG3949-PA
protein.
Length = 127
Score = 41.9 bits (94), Expect = 0.001
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +2
Query: 515 NTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPL 631
N +R G N TK + + A +VV+A D +PIE++L LPL
Sbjct: 32 NQLRKGANEATKTLNRGLADIVVLAGDAEPIEILLHLPL 70
>M89628-1|AAB00734.1| 661|Drosophila melanogaster retinal
degeneration C protein protein.
Length = 661
Score = 32.7 bits (71), Expect = 0.71
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 509 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIE 610
RP+ ++ T+ VT L +K +V+ HD+DP +
Sbjct: 617 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTD 650
>BT015959-1|AAV36844.1| 603|Drosophila melanogaster RH46370p
protein.
Length = 603
Score = 32.7 bits (71), Expect = 0.71
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 509 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIE 610
RP+ ++ T+ VT L +K +V+ HD+DP +
Sbjct: 559 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTD 592
>AE014296-3312|AAF49044.2| 603|Drosophila melanogaster CG6571-PA,
isoform A protein.
Length = 603
Score = 32.7 bits (71), Expect = 0.71
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 509 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIE 610
RP+ ++ T+ VT L +K +V+ HD+DP +
Sbjct: 559 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTD 592
>AE014296-3311|AAO41219.1| 661|Drosophila melanogaster CG6571-PD,
isoform D protein.
Length = 661
Score = 32.7 bits (71), Expect = 0.71
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 509 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIE 610
RP+ ++ T+ VT L +K +V+ HD+DP +
Sbjct: 617 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTD 650
>AE014296-3310|AAO41218.1| 661|Drosophila melanogaster CG6571-PC,
isoform C protein.
Length = 661
Score = 32.7 bits (71), Expect = 0.71
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 509 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIE 610
RP+ ++ T+ VT L +K +V+ HD+DP +
Sbjct: 617 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTD 650
>AE014296-3309|AAO41217.1| 661|Drosophila melanogaster CG6571-PB,
isoform B protein.
Length = 661
Score = 32.7 bits (71), Expect = 0.71
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 509 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIE 610
RP+ ++ T+ VT L +K +V+ HD+DP +
Sbjct: 617 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTD 650
>AY058343-1|AAL13572.1| 403|Drosophila melanogaster GH11867p
protein.
Length = 403
Score = 29.1 bits (62), Expect = 8.8
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 278 QIWTSHELAECPDQWQSSLASSRREDSRSSWA 183
Q W +H +A+ ++ +S+A+ RR SRSS A
Sbjct: 143 QAWYNHNIADRGSRFWTSIAAVRRAHSRSSHA 174
>AE014297-1960|AAN13634.1| 403|Drosophila melanogaster CG31344-PA
protein.
Length = 403
Score = 29.1 bits (62), Expect = 8.8
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 278 QIWTSHELAECPDQWQSSLASSRREDSRSSWA 183
Q W +H +A+ ++ +S+A+ RR SRSS A
Sbjct: 143 QAWYNHNIADRGSRFWTSIAAVRRAHSRSSHA 174
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,210,621
Number of Sequences: 53049
Number of extensions: 450451
Number of successful extensions: 1617
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1612
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4443987051
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -