Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_H10
(954 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 0.020
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 0.47
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 29 1.3
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 28 1.7
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 28 2.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 2.9
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 2.9
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 24 4.0
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 27 5.1
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 941 PPPPPPPP 918
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 939 PPPPPPPP 916
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 26.6 bits (56), Expect(2) = 0.020
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 856 PPPPPPPP 879
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 26.6 bits (56), Expect(2) = 0.020
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 859 PPPPPPPXXGXKKKKXXXXXGG 924
PPPPPPP K+K G
Sbjct: 24 PPPPPPPGYVKKRKNKTPAQSG 45
Score = 26.2 bits (55), Expect = 6.8
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 856 PPPPPPPPXXGXKKKKXXXXXG 921
PPPPPPP +K K G
Sbjct: 24 PPPPPPPGYVKKRKNKTPAQSG 45
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 941 PPPPPPPP 918
PPPPPPPP
Sbjct: 761 PPPPPPPP 768
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 939 PPPPPPPP 916
PPPPPPPP
Sbjct: 761 PPPPPPPP 768
Score = 26.6 bits (56), Expect(2) = 0.47
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 856 PPPPPPPP 879
PPPPPPPP
Sbjct: 761 PPPPPPPP 768
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 648 PPPXKKXVGXGWXXPPPPP 704
PPP G G PPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPP 782
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 940 PPPPPPPP 917
PPPPPPPP
Sbjct: 775 PPPPPPPP 782
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 939 PPPPPPPP 916
PPPPPPPP
Sbjct: 775 PPPPPPPP 782
Score = 26.6 bits (56), Expect(2) = 0.61
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 856 PPPPPPPP 879
PPPPPPPP
Sbjct: 775 PPPPPPPP 782
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 941 PPPPPPPP 918
PPPPPPPP
Sbjct: 776 PPPPPPPP 783
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 939 PPPPPPPP 916
PPPPPPPP
Sbjct: 776 PPPPPPPP 783
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 856 PPPPPPPP 879
PPPPPPPP
Sbjct: 776 PPPPPPPP 783
Score = 21.8 bits (44), Expect(2) = 0.47
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +1
Query: 847 LXXPPPPPP 873
L PPPPPP
Sbjct: 729 LKSPPPPPP 737
Score = 21.4 bits (43), Expect(2) = 0.61
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +1
Query: 847 LXXPPPPPPP 876
L PPPPPP
Sbjct: 728 LLKSPPPPPP 737
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 28.7 bits (61), Expect = 1.3
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -2
Query: 947 FXPPPPPPPP 918
F PPPPPPPP
Sbjct: 944 FPPPPPPPPP 953
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 939 PPPPPPPP 916
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 856 PPPPPPPP 879
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 939 PPPPPPPP 916
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 856 PPPPPPPP 879
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 28.3 bits (60), Expect = 1.7
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 856 PPPPPPPPXXGXKK 897
PPPPPPPP KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 941 PPPPPPPP 918
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 939 PPPPPPPP 916
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 26.2 bits (55), Expect = 6.8
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 859 PPPPPPPXXGXKKK 900
PPPPPPP +KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 27.9 bits (59), Expect = 2.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 939 PPPPPPPPXXXXFF 898
PPPPPPPP F+
Sbjct: 306 PPPPPPPPPSNDFW 319
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 940 PPPPPPPP 917
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 856 PPPPPPPP 879
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 940 PPPPPPPP 917
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 856 PPPPPPPP 879
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.5 bits (58), Expect = 2.9
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -3
Query: 946 FXPPPPPPPP 917
+ PPPPPPPP
Sbjct: 187 YNPPPPPPPP 196
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 856 PPPPPPPP 879
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 856 PPPPPPPP 879
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 27.5 bits (58), Expect = 2.9
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -3
Query: 946 FXPPPPPPPP 917
+ PPPPPPPP
Sbjct: 368 YSPPPPPPPP 377
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 939 PPPPPPPP 916
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 856 PPPPPPPP 879
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 23.8 bits (49), Expect(2) = 4.0
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -3
Query: 937 PPPPPPP 917
PPPPPPP
Sbjct: 337 PPPPPPP 343
Score = 21.4 bits (43), Expect(2) = 4.0
Identities = 8/17 (47%), Positives = 8/17 (47%)
Frame = -3
Query: 934 PPPPPPXXXXXFFFSPP 884
PPPPPP PP
Sbjct: 361 PPPPPPRSAPSTGRQPP 377
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 103 TKIRKPIIGLSYPKFFKRNFPPY 35
TK RKP+ L++ K+++ N P Y
Sbjct: 329 TKFRKPMFFLAFGKYWQLNLPIY 351
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,274,877
Number of Sequences: 5004
Number of extensions: 32499
Number of successful extensions: 439
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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