Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_H06
         (982 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4WP21 Cluster: Small nuclear ribonucleoprotein SmB, pu...    34   4.8  

>UniRef50_Q4WP21 Cluster: Small nuclear ribonucleoprotein SmB,
           putative; n=2; Eukaryota|Rep: Small nuclear
           ribonucleoprotein SmB, putative - Aspergillus fumigatus
           (Sartorya fumigata)
          Length = 357

 Score = 34.3 bits (75), Expect = 4.8
 Identities = 25/83 (30%), Positives = 29/83 (34%), Gaps = 2/83 (2%)
 Frame = +2

Query: 314 GPLXGLKNXXKKXGGXPPFPXGGKXFXPPXG--GXKXPXAPLKTFXFFFXPXXKKKXXNX 487
           GP+ G+       GG   FP GG    PP G  G   P    + F  F      +   N 
Sbjct: 253 GPVAGVGGPPPPPGGFGGFPPGGFPGAPPPGFAGRGGPPGGPRKFLSFLKSFPFQSEANH 312

Query: 488 VFXEXNSPKXGFLWAXXQNSPPG 556
            F     P  GF     Q  PPG
Sbjct: 313 PFLAGFGPPPGF---APQGGPPG 332


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 414,812,626
Number of Sequences: 1657284
Number of extensions: 4747694
Number of successful extensions: 10355
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 4792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10012
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 91856548575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)