Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_H02
         (933 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49830-7|AAM98046.1|  774|Caenorhabditis elegans Neuronal igcam ...    32   0.51 
U49830-6|AAK31481.1|  964|Caenorhabditis elegans Neuronal igcam ...    32   0.51 
U49830-5|AAK31482.1| 1227|Caenorhabditis elegans Neuronal igcam ...    32   0.51 
U49830-4|AAU20850.1| 1196|Caenorhabditis elegans Neuronal igcam ...    32   0.51 

>U49830-7|AAM98046.1|  774|Caenorhabditis elegans Neuronal igcam
           protein 6, isoform c protein.
          Length = 774

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 178 CEAYNDIIKQHPEFEHYDYRAPKNKTNLINAEEVNLECNM 297
           C A+N + K H + +      P  KTN ++ E VN+ C +
Sbjct: 188 CTAHNKLGKAHAQVQLIVVNKPSIKTNFLDEETVNMSCEV 227


>U49830-6|AAK31481.1|  964|Caenorhabditis elegans Neuronal igcam
           protein 6, isoform a protein.
          Length = 964

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 178 CEAYNDIIKQHPEFEHYDYRAPKNKTNLINAEEVNLECNM 297
           C A+N + K H + +      P  KTN ++ E VN+ C +
Sbjct: 378 CTAHNKLGKAHAQVQLIVVNKPSIKTNFLDEETVNMSCEV 417


>U49830-5|AAK31482.1| 1227|Caenorhabditis elegans Neuronal igcam
           protein 6, isoform b protein.
          Length = 1227

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 178 CEAYNDIIKQHPEFEHYDYRAPKNKTNLINAEEVNLECNM 297
           C A+N + K H + +      P  KTN ++ E VN+ C +
Sbjct: 641 CTAHNKLGKAHAQVQLIVVNKPSIKTNFLDEETVNMSCEV 680


>U49830-4|AAU20850.1| 1196|Caenorhabditis elegans Neuronal igcam
           protein 6, isoform d protein.
          Length = 1196

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 178 CEAYNDIIKQHPEFEHYDYRAPKNKTNLINAEEVNLECNM 297
           C A+N + K H + +      P  KTN ++ E VN+ C +
Sbjct: 610 CTAHNKLGKAHAQVQLIVVNKPSIKTNFLDEETVNMSCEV 649


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,586,693
Number of Sequences: 27780
Number of extensions: 219224
Number of successful extensions: 532
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2402214122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)