Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_G20
(974 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1267 + 25318220-25318407,25318674-25318844,25319086-253191... 34 0.20
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 32 0.80
01_05_0433 - 22094784-22095659 31 1.4
06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336... 31 1.8
07_01_0080 + 587674-588510 30 3.2
02_05_0686 - 30900748-30902167,30903442-30904742 29 5.6
12_01_1043 + 10731454-10732131 29 7.4
03_02_0786 - 11169820-11170158,11170245-11170433,11171173-111714... 29 7.4
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 29 7.4
01_03_0005 + 11568545-11569119,11569179-11569191 29 7.4
01_01_0518 - 3810290-3810397,3810469-3810851,3810949-3811069 29 7.4
07_03_0890 - 22332768-22333382 28 9.8
06_01_0738 + 5458182-5458374,5460512-5461766,5461861-5462053,546... 28 9.8
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 28 9.8
03_06_0448 - 34005581-34005655,34005735-34005830,34006669-340076... 28 9.8
>07_03_1267 +
25318220-25318407,25318674-25318844,25319086-25319188,
25319394-25319885,25320723-25321156,25321333-25321388,
25321711-25321775,25322139-25322147
Length = 505
Score = 33.9 bits (74), Expect = 0.20
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = -2
Query: 349 PXGGGGXXXPPPXXGAPXPPPP 284
P GGGG PPP GA PPP
Sbjct: 77 PDGGGGGEMPPPYGGAAAAPPP 98
Score = 28.7 bits (61), Expect = 7.4
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +3
Query: 285 GGGGXGAPXXGGGXXXPPPP 344
GGGG P GG PPPP
Sbjct: 80 GGGGEMPPPYGGAAAAPPPP 99
Score = 28.3 bits (60), Expect = 9.8
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 343 GGGGXXXPPPXXGAPXPPPP 284
GGGG PP A PPPP
Sbjct: 80 GGGGEMPPPYGGAAAAPPPP 99
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 31.9 bits (69), Expect = 0.80
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -2
Query: 349 PXGGGGXXXPPPXXGAPXPPPPXXXP 272
P G GG PP GAP PP P P
Sbjct: 1189 PRGHGGVGGPPTPPGAPAPPMPPGVP 1214
Score = 30.3 bits (65), Expect = 2.4
Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Frame = -2
Query: 406 PPPXXXXXXXXXXXXXXXXPXGGGGXXXPPPXXG---APXPPPP 284
PPP P G GG PPP G P PPPP
Sbjct: 1123 PPPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGPPAPPPP 1166
>01_05_0433 - 22094784-22095659
Length = 291
Score = 31.1 bits (67), Expect = 1.4
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -2
Query: 343 GGGGXXXPPPXXGAPXPPPPXXXP 272
GGGG PPP PPPP P
Sbjct: 36 GGGGAARPPPMVPGRVPPPPMYRP 59
>06_01_0474 -
3362734-3362827,3363179-3363366,3363458-3363700,
3363820-3364098,3364189-3364386,3364475-3365110,
3365209-3365463,3365579-3365685,3365770-3369566,
3369677-3370166,3370918-3371308,3371481-3371573,
3371687-3371810,3372544-3372791
Length = 2380
Score = 30.7 bits (66), Expect = 1.8
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 334 GXXXPPPXXGAPXPPPP 284
G PPP GAP PPPP
Sbjct: 2 GAAPPPPGTGAPPPPPP 18
>07_01_0080 + 587674-588510
Length = 278
Score = 29.9 bits (64), Expect = 3.2
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 322 PPPXXGAPXPPPPXXXP 272
PPP G+P PPPP P
Sbjct: 97 PPPSSGSPPPPPPPPPP 113
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.1 bits (62), Expect = 5.6
Identities = 13/41 (31%), Positives = 14/41 (34%)
Frame = -2
Query: 406 PPPXXXXXXXXXXXXXXXXPXGGGGXXXPPPXXGAPXPPPP 284
PPP P G PPP +P PPPP
Sbjct: 329 PPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPP 369
Score = 28.7 bits (61), Expect = 7.4
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 322 PPPXXGAPXPPPPXXXP 272
PPP AP PPPP P
Sbjct: 329 PPPPKAAPPPPPPKGPP 345
>12_01_1043 + 10731454-10732131
Length = 225
Score = 28.7 bits (61), Expect = 7.4
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -2
Query: 343 GGGGXXXPPPXXGAPXPPPPXXXP 272
GGG PP P PPPP P
Sbjct: 35 GGGHAKRVPPPASVPPPPPPPPAP 58
>03_02_0786 -
11169820-11170158,11170245-11170433,11171173-11171469,
11171568-11171630,11171884-11171997,11173011-11173091,
11173176-11173307,11174265-11174363,11174453-11174530,
11174641-11174901
Length = 550
Score = 28.7 bits (61), Expect = 7.4
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3
Query: 336 GXXXXPPPXXGPPXPPP 286
G PPP GPP PPP
Sbjct: 25 GFPVAPPPPMGPPPPPP 41
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 28.7 bits (61), Expect = 7.4
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Frame = -2
Query: 349 PXGGGGXXXPPPXXGAPXPP--PPXXXP 272
P G GG PPP P PP PP P
Sbjct: 258 PNGSGGPPRPPPPQVPPPPPQAPPPPPP 285
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 28.7 bits (61), Expect = 7.4
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 288 GGGXGAPXXGGGXXXPPPPXG 350
GGG G+ GGG PPP G
Sbjct: 99 GGGGGSSTGGGGIYYPPPTGG 119
>01_01_0518 - 3810290-3810397,3810469-3810851,3810949-3811069
Length = 203
Score = 28.7 bits (61), Expect = 7.4
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +3
Query: 273 GXXXGGGGXGAPXXGGGXXXPPP 341
G GGGG GA GGG PP
Sbjct: 76 GKQQGGGGGGAAAAGGGQEQAPP 98
>07_03_0890 - 22332768-22333382
Length = 204
Score = 28.3 bits (60), Expect = 9.8
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -2
Query: 334 GXXXPPPXXGAPXPPPPXXXP 272
G PPP P PPPP P
Sbjct: 73 GSPPPPPAEATPPPPPPPPPP 93
>06_01_0738 +
5458182-5458374,5460512-5461766,5461861-5462053,
5462151-5462344,5462443-5462601,5462683-5463025
Length = 778
Score = 28.3 bits (60), Expect = 9.8
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 285 GGGGXGAPXXGGGXXXPPP 341
GGGG A GGG PPP
Sbjct: 74 GGGGGAASNNGGGGSAPPP 92
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 28.3 bits (60), Expect = 9.8
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -2
Query: 343 GGGGXXXPPPXXGAPXPPPPXXXP 272
G G PP AP PPPP P
Sbjct: 317 GTGAPPPPPAHPAAPAPPPPAPSP 340
>03_06_0448 -
34005581-34005655,34005735-34005830,34006669-34007616,
34007684-34007851,34007908-34008099,34008164-34008346,
34008414-34008590,34008667-34012074
Length = 1748
Score = 28.3 bits (60), Expect = 9.8
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 319 PPXXGAPXPPPPXXXP 272
PP GAP PPPP P
Sbjct: 34 PPLAGAPPPPPPFRPP 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,145,005
Number of Sequences: 37544
Number of extensions: 252844
Number of successful extensions: 4976
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3214
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2834967080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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