Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_G19
         (902 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    24   1.9  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    24   1.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    24   1.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    24   1.9  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    23   2.5  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    23   4.3  

>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 641 IVDQHATEVHGRAVTEHSPQL 579
           I+D+ AT+VHG  V    P++
Sbjct: 68  IIDEAATKVHGTTVRVRPPKV 88


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 641 IVDQHATEVHGRAVTEHSPQL 579
           I+D+ AT+VHG  V    P++
Sbjct: 382 IIDEAATKVHGTTVRVRPPKV 402


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 641 IVDQHATEVHGRAVTEHSPQL 579
           I+D+ AT+VHG  V    P++
Sbjct: 615 IIDEAATKVHGTTVRVRPPKV 635


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 641 IVDQHATEVHGRAVTEHSPQL 579
           I+D+ AT+VHG  V    P++
Sbjct: 615 IIDEAATKVHGTTVRVRPPKV 635


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -1

Query: 539 NAKCLQEDILHMRCTIARRGFGGQAKQCTIAVL 441
           N + + EDI    CT     F G  K C I VL
Sbjct: 39  NGQFVPEDINPDLCTHINYAFVGLDKDCNIQVL 71


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 599 LLLSHGLQLRAGPLSVYRSIHRQSRNRFINII*SRETVD 715
           L + HG+++R  P   YR +   +   F  +   R+ VD
Sbjct: 202 LRILHGVEIRDYPKFPYRGVMIDTARNFFPVDLIRKVVD 240


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,797
Number of Sequences: 336
Number of extensions: 3641
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25134219
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)