Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_G19
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    32   0.097
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch...    31   0.17 
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    27   4.8  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    26   6.4  

>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 32.3 bits (70), Expect = 0.097
 Identities = 19/70 (27%), Positives = 35/70 (50%)
 Frame = -1

Query: 635 DQHATEVHGRAVTEHSPQLSLTIDFNNMNIIFNAKCLQEDILHMRCTIARRGFGGQAKQC 456
           D+ +  V  R +TEHS ++S  I + ++ ++F A   Q +  +     A   F G +   
Sbjct: 73  DELSGIVKARYLTEHSSRISFYICYFSIFLLFFAISFQAECYYSLTAYATSAFAGHSLLS 132

Query: 455 TIAVLR*VLN 426
           TIAV   +++
Sbjct: 133 TIAVANNIIS 142


>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 25/86 (29%), Positives = 41/86 (47%)
 Frame = +3

Query: 348 SIGQCIKTVLRRACVEKRLTIGLLPAIQYLSKNCNGALFCLTAEAPPGDSATHMQDVLLQ 527
           S+   +K VL+RA V   L  G+  A + L +    A  C+  E+   D   +++  L++
Sbjct: 28  SVEDALKEVLKRALVHDGLARGIREASKALDRR--QAHLCVLCESC--DQEAYVK--LVE 81

Query: 528 AFCVENDIHVIKVDCETKLRRMLGYC 605
           A C E++  +IKV     L    G C
Sbjct: 82  ALCAESETPLIKVADPKVLGEWAGLC 107


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
           Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = +2

Query: 200 SVQIHIRXSLRSLEISEIQALSSIRLSKMYKEAVVPV 310
           S Q+  + S RS ++ +I  LSS +L ++Y E +VP+
Sbjct: 160 SRQVFSKNSFRSDQLVKIP-LSSFKLGQVYDERIVPL 195


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +1

Query: 514 MSSCKHFALKMIFMLLKSIVRLS*GECSVTALPWTSVACWSTIRIQIHSQTVKK 675
           MS+  +  LK +    ++      GEC V   PW     WS I+  +    V K
Sbjct: 246 MSNMDYGPLKFMIKCFEAHYPECLGECIVHKAPWLFQGVWSIIKSWLDPVVVSK 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,141,364
Number of Sequences: 5004
Number of extensions: 57543
Number of successful extensions: 151
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)