Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_G19
(902 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3513| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.059
SB_19199| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.10
SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45) 34 0.14
SB_45996| Best HMM Match : VWA (HMM E-Value=2.6e-12) 33 0.32
SB_25624| Best HMM Match : PHD (HMM E-Value=1.3e-17) 32 0.73
SB_57802| Best HMM Match : Glyco_transf_10 (HMM E-Value=3.1e-05) 32 0.73
SB_28930| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_7119| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_51205| Best HMM Match : RVT_1 (HMM E-Value=1.7e-21) 29 5.1
SB_11292| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.8
SB_54792| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
>SB_3513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 35.5 bits (78), Expect = 0.059
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 465 CLTAEAPPGDSATHMQDVLLQAFCVENDIHVIKVDCETKLRRMLGYC--SPMDFSCVLVH 638
C+ E D + L++AFC E I V+KVD KL+ + G+ S C+LV
Sbjct: 9 CVLVENRHADPGIQVHCRLIEAFCWEYPIPVVKVDSSRKLKTIAGFSQESTEPVHCLLVK 68
Query: 639 YPY 647
Y
Sbjct: 69 DDY 71
>SB_19199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 68
Score = 34.7 bits (76), Expect = 0.10
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 465 CLTAEAPPGDSATHMQDVLLQAFCVENDIHVIKVDCETKLRRMLGYC--SPMDFSCVLV 635
C+ E D + L++AFC E I V+KVD KL+ + G+ S C+LV
Sbjct: 9 CVLVENRHADPGIQVHCRLIEAFCWEYPIPVVKVDSSRKLKTIAGFSQESTEPVHCLLV 67
>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
Length = 427
Score = 34.3 bits (75), Expect = 0.14
Identities = 26/85 (30%), Positives = 42/85 (49%)
Frame = +3
Query: 351 IGQCIKTVLRRACVEKRLTIGLLPAIQYLSKNCNGALFCLTAEAPPGDSATHMQDVLLQA 530
I ++ VL+ A + L+ GL A + L K A C+ + D A +++ L++A
Sbjct: 21 INTALQEVLKTALIHDGLSRGLHEAAKSLDKR--EAHLCILSNNC--DEAMYVK--LVEA 74
Query: 531 FCVENDIHVIKVDCETKLRRMLGYC 605
C E+ I ++KVD KL G C
Sbjct: 75 LCAEHGIPLLKVDDSKKLGEWAGLC 99
>SB_45996| Best HMM Match : VWA (HMM E-Value=2.6e-12)
Length = 595
Score = 33.1 bits (72), Expect = 0.32
Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 3/134 (2%)
Frame = +3
Query: 432 YLSKNCNGALF---CLTAEAPPGDSATHMQDVLLQAFCVENDIHVIKVDCETKLRRMLGY 602
+L K +G +F CL +A +S +H+ VL ++C T++ L
Sbjct: 300 WLIKGKDGRIFSAHCLGCKAGLAESCSHIASVLFY------------IECWTRINGKLA- 346
Query: 603 CSPMDFSCVLVHYPYTDPFTDSQEIDLSTLSEAERQLIXHCESXWGYSQMPVIKLPXSEL 782
C+ + S +L Y + ++EID S+ + + +L + ES YSQ + +++
Sbjct: 347 CTQVKCSWLLPTYVSNVTYARAKEIDFSSAKKLKEKLDDNIESFNEYSQSRTVGDATNKI 406
Query: 783 TRXXXCEKKILRYY 824
T + + +Y
Sbjct: 407 TTPSVSAEDVSEFY 420
>SB_25624| Best HMM Match : PHD (HMM E-Value=1.3e-17)
Length = 1828
Score = 31.9 bits (69), Expect = 0.73
Identities = 20/96 (20%), Positives = 45/96 (46%)
Frame = +3
Query: 564 VDCETKLRRMLGYCSPMDFSCVLVHYPYTDPFTDSQEIDLSTLSEAERQLIXHCESXWGY 743
++C T++ L C+ + S +L Y + ++EID S+ + + +L + ES Y
Sbjct: 1232 IECWTRINGKLA-CTQVKCSWLLPTYVSNVTYARAKEIDFSSAKKLKEKLDDNIESFNEY 1290
Query: 744 SQMPVIKLPXSELTRXXXCEKKILRYYFQVXRHFGL 851
SQ + +++T + + +Y ++ + L
Sbjct: 1291 SQSRTVGDATNKITTPSVSAEDVSEFYKKLNHNLDL 1326
>SB_57802| Best HMM Match : Glyco_transf_10 (HMM E-Value=3.1e-05)
Length = 236
Score = 31.9 bits (69), Expect = 0.73
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +2
Query: 317 ENLQC--YSS*KLYRTMYQDSVKASLCRKKVNNWLTSRHS-ILIEELQ 451
EN C Y + KL+RT+ SV + VN+W+ + HS IL++E +
Sbjct: 139 ENALCEDYITEKLWRTLMLGSVPIYYGSRTVNDWMPNNHSVILVQEFK 186
>SB_28930| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 727
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = -1
Query: 617 VHGRAVTEHSPQLSLTID-FNNMNIIFN-AKCL--QEDILHMRCTIARRGFG 474
VHGR V EH +L T+D N + N KC+ +++ M ++ +G G
Sbjct: 242 VHGRTVEEHDARLRKTLDLLKNKGLTLNKKKCVFRMSELIFMGYLLSSKGIG 293
>SB_7119| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 565
Score = 30.3 bits (65), Expect = 2.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 186 KC*CILCKFTFGFHCGVWKLV 248
KC C + K TFGFH G W+ +
Sbjct: 71 KCTCPIDKATFGFHGGKWRCI 91
>SB_51205| Best HMM Match : RVT_1 (HMM E-Value=1.7e-21)
Length = 387
Score = 29.1 bits (62), Expect = 5.1
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = -1
Query: 617 VHGRAVTEHSPQLSLTID-FNNMNIIFN-AKCL--QEDILHMRCTIARRGFG 474
VHGR V EH +L T+D N + N KC+ ++ M ++ +G G
Sbjct: 172 VHGRTVKEHDARLRKTLDLLKNKGLTLNKEKCVFRMSELTFMGYLLSSKGIG 223
>SB_11292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1529
Score = 28.7 bits (61), Expect = 6.8
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = -1
Query: 617 VHGRAVTEHSPQLSLTID-FNNMNIIFN-AKCL--QEDILHMRCTIARRGFG 474
VHGR V EH +L T+D N + N KC+ ++ M ++ +G G
Sbjct: 999 VHGRTVEEHHARLRKTLDLLKNKGLTLNKEKCVFRMSELTFMGYLLSSKGIG 1050
>SB_54792| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 578
Score = 28.3 bits (60), Expect = 9.0
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 526 KHFALKMIFMLLKSIVRLS*GE-CSVT-ALPWTSVACWSTIRIQIHSQTVKK 675
+H A K +F +S +++ E CS T WTS CW T R+ +T +K
Sbjct: 90 QHGAGKTVFKYRRSDIKVELLEGCSYTFKAKWTSRQCWRTYRLCGKLETWRK 141
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,910,011
Number of Sequences: 59808
Number of extensions: 450749
Number of successful extensions: 919
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2597949818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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