Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_G16
         (916 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      28   0.10 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   5.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.8  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   8.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   8.9  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 28.3 bits (60), Expect = 0.10
 Identities = 15/31 (48%), Positives = 15/31 (48%)
 Frame = +2

Query: 539 SLPRPGSRPLGGTPTPVTNTSLKANPQPSRN 631
           S PR GS P   TPTP T   L    Q  RN
Sbjct: 149 SFPRGGSLPTPVTPTPTTVQQLLRRAQIRRN 179


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +2

Query: 557  SRPLGGTPTPVTNTSLKANPQPSRNFGSGH 646
            +R   G  T      ++ N  PSR  GSGH
Sbjct: 1902 ARGKDGMTTEEMRKLIERNEAPSRQTGSGH 1931


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 68  ASPRSNDRRPRPVSYYSSKFIS*ARSP 148
           ASPRS +  P P    +S     ARSP
Sbjct: 736 ASPRSPNASPSPAEQCASTTTITARSP 762


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 690 PSRVS*TNNTTLLSIYTATRQLRRPCRPKP 779
           P  +S + ++ + S+Y +  Q   PC P P
Sbjct: 369 PPTLSESYSSYVNSMYASGAQFATPCTPSP 398


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 741 LYILTGVLYCLFTTL 697
           LYIL+G LY   TT+
Sbjct: 309 LYILSGCLYYFSTTI 323


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 545 PRPGSRPLGGTPTP 586
           P PG   +G TPTP
Sbjct: 115 PSPGMGHMGHTPTP 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,265
Number of Sequences: 438
Number of extensions: 5196
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)