Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_G12
(936 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha... 232 6e-62
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo... 183 4e-47
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar... 164 1e-41
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 31 0.31
SPAC630.10 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.6
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 27 3.8
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 6.6
>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 321
Score = 232 bits (567), Expect = 6e-62
Identities = 104/148 (70%), Positives = 130/148 (87%)
Frame = +3
Query: 336 NIKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSGSGE 515
+IK+F+G+SHP+LA+K+ R+G+ LGKV ++SN ET V IGESVR EDV+I+Q+G G
Sbjct: 5 SIKIFAGNSHPELAEKVARRIGLSLGKVAVVQYSNRETSVTIGESVRDEDVFILQTGCGS 64
Query: 516 INDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPITXKLVANILSVSGAD 695
IND+LMELLIMINAC+ ASA R+TA+IPCFPYARQDKKDKSRAPIT +LVAN+L +G +
Sbjct: 65 INDHLMELLIMINACRSASARRITAIIPCFPYARQDKKDKSRAPITARLVANMLQTAGCN 124
Query: 696 HIITMDLHASQIQGFFDIPVDNLFAEPA 779
HIITMDLHASQIQGFF++PVDNL+AEP+
Sbjct: 125 HIITMDLHASQIQGFFNVPVDNLYAEPS 152
>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
Prs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 183 bits (445), Expect = 4e-47
Identities = 90/156 (57%), Positives = 116/156 (74%), Gaps = 1/156 (0%)
Frame = +3
Query: 330 MPNIKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSGS 509
M + + G SHP+L I +RLGI V K+F+N ET VEI ESVR +DV+I+QSGS
Sbjct: 1 MKSATIIGGGSHPELLHLISNRLGITPCDVSLKRFANGETSVEIRESVRDKDVFILQSGS 60
Query: 510 GEINDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPITXKLVANILSVSG 689
+ND+LMELLI+I+ACK SA R+TAV+P FPY++Q K K R IT ++VAN+L+V+G
Sbjct: 61 STVNDSLMELLIIISACKGGSAKRITAVMPYFPYSKQSKMRKYRDAITARMVANLLTVAG 120
Query: 690 ADHIITMDLHASQIQGFFDIPVDNLFAEP-ACKWSR 794
DHIIT+DLHASQ+QGFF PVDNL+AEP +W R
Sbjct: 121 VDHIITLDLHASQMQGFFTRPVDNLYAEPNIAEWIR 156
>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 341
Score = 164 bits (399), Expect = 1e-41
Identities = 94/176 (53%), Positives = 113/176 (64%), Gaps = 24/176 (13%)
Frame = +3
Query: 330 MPNIKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSGS 509
M N+ VF SHP L + I + L +D+G+V KFSN ET V I +SVRG DVYIV S
Sbjct: 1 MKNLVVFGTESHPKLTESICEHLCLDIGRVELSKFSNGETSVRIKQSVRGCDVYIVSPAS 60
Query: 510 GEINDNLMELLIMINACKIASASRVTAVIPCFPYARQ-DKK-DKSRAPI----------- 650
G++ND+LMELLIMI+ACK ASA +VTAV+P FPY+RQ D+K S AP+
Sbjct: 61 GQVNDHLMELLIMISACKTASAKKVTAVLPVFPYSRQPDQKFSFSGAPLSDLQDAVVPCK 120
Query: 651 -----------TXKLVANILSVSGADHIITMDLHASQIQGFFDIPVDNLFAEPACK 785
+ LVA++L SGADHIITMDLH Q QGFFDIPVDNLF P K
Sbjct: 121 KQTGYHPWIAQSGTLVADLLMCSGADHIITMDLHDPQFQGFFDIPVDNLFGRPLLK 176
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 30.7 bits (66), Expect = 0.31
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +2
Query: 590 RHTLLPVRAARQKRQEQSPDHG--QTRCQHPFSVWSRSHHHYGSSCVANSRIL 742
R TL P+ + +Q+ +QSP G Q Q P SV S HY + V ++L
Sbjct: 59 RSTLHPLLSQQQQPAQQSPSLGPAQQNIQQPPSVSIASQPHYAEAIVPIQQVL 111
>SPAC630.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 28.3 bits (60), Expect = 1.6
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Frame = +3
Query: 597 PCFPYARQDKKDKSRAPITXKLVANILSVSGADHIITMDLHA----SQIQGFFD-IPVDN 761
PCF Y + K+ K I V N S G + +DLH+ + Q F + P +
Sbjct: 93 PCFSYCARLKEPKDLLEIGSVSVDNKCSTCGLFRVSRIDLHSVHPLIKQQDFLERTPEEG 152
Query: 762 LFAEPACKWSRNY 800
LF +C N+
Sbjct: 153 LFTGISCSLVLNF 165
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 27.1 bits (57), Expect = 3.8
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 622 TKKTRAEPRSRXNSLPTSF-QCLEPITSSLWIFMRRKFKDSLIFR*ITSLP 771
T+ R PR P ++ +EP TS +W+F K K L ++ +T +P
Sbjct: 76 TQYQRLTPREHVLRRPDTYIGSIEPTTSEMWVFDSEKNK--LDYKAVTYVP 124
>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 343 LMFGILVVKGRT*SNLFTTSSRVI 272
L+FGIL + G + L+TT +R+I
Sbjct: 319 LIFGILCIAGFVVNELYTTRTRII 342
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,335,825
Number of Sequences: 5004
Number of extensions: 64298
Number of successful extensions: 199
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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