Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_G12
(936 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0763 - 24405525-24405701,24406209-24406368,24406924-244070... 160 2e-39
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 84 1e-16
01_06_0553 + 30173964-30174349,30175124-30175439,30175523-301756... 38 0.011
12_02_0699 + 22245933-22246213,22246493-22246575,22246844-222471... 31 1.00
02_02_0467 - 10620976-10621299 30 2.3
12_01_0829 + 7674416-7674471,7675043-7675129,7675210-7675250,767... 29 5.3
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389... 29 5.3
07_03_0352 + 17089666-17089982,17090326-17090410,17090674-17090913 28 9.3
02_05_0181 - 26522849-26522932,26523053-26523184,26523263-265233... 28 9.3
>06_03_0763 -
24405525-24405701,24406209-24406368,24406924-24407005,
24407098-24407167,24407443-24407607,24407731-24407874,
24408467-24408715,24409006-24409221,24409306-24409398
Length = 451
Score = 160 bits (388), Expect = 2e-39
Identities = 74/150 (49%), Positives = 109/150 (72%)
Frame = +3
Query: 327 RMPNIKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSG 506
R +K+FSG+++ LAQ+I LG+DLGKV+ K+F++ E V++ ESVRG DV++VQ
Sbjct: 86 RDSRLKIFSGTANRPLAQEIASYLGVDLGKVLIKRFADGEIYVQLQESVRGCDVFLVQPT 145
Query: 507 SGEINDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPITXKLVANILSVS 686
+N+NLMEL +MI+AC+ ASA +T VIP F YAR D+K + R IT KL AN+L+ +
Sbjct: 146 CSPVNENLMELFVMIDACRRASARSITVVIPYFGYARADRKAQGREAITAKLSANLLTEA 205
Query: 687 GADHIITMDLHASQIQGFFDIPVDNLFAEP 776
G+D +I D+H++Q G+FDIPVD++ +P
Sbjct: 206 GSDRVIVCDIHSTQALGYFDIPVDHIHGQP 235
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 84.2 bits (199), Expect = 1e-16
Identities = 42/89 (47%), Positives = 59/89 (66%)
Frame = +3
Query: 507 SGEINDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPITXKLVANILSVS 686
S EI L L IN + ASA +TAVIP F YAR D+K + R I KLVAN+++ +
Sbjct: 110 SQEIASYLGLELGKINIKRRASAKNITAVIPYFGYARADRKSQGRESIAAKLVANMITEA 169
Query: 687 GADHIITMDLHASQIQGFFDIPVDNLFAE 773
GA+ ++ DLH+SQ G+FDIPVD+++ +
Sbjct: 170 GANRVLVCDLHSSQAMGYFDIPVDHVYGQ 198
Score = 36.7 bits (81), Expect = 0.026
Identities = 13/31 (41%), Positives = 25/31 (80%)
Frame = +3
Query: 339 IKVFSGSSHPDLAQKIVDRLGIDLGKVVTKK 431
+++FSG+++P L+Q+I LG++LGK+ K+
Sbjct: 98 LRIFSGTANPSLSQEIASYLGLELGKINIKR 128
>01_06_0553 +
30173964-30174349,30175124-30175439,30175523-30175618,
30175710-30175778,30175878-30176006,30176165-30176264,
30177321-30177454
Length = 409
Score = 37.9 bits (84), Expect = 0.011
Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 11/180 (6%)
Frame = +3
Query: 237 ATTSGLVSMKSTITLEDVVNKLDHVLPLTTRM---PNIKVFSGSSHPDLAQKIVDRLG-I 404
AT S +VS S I L V V +T + N+ +F +LA+++V R I
Sbjct: 62 ATGSSIVSNASGIHLAAPVLAPLAVPKMTGAVGAHKNVLLFHCEEMRELAEQVVARNDDI 121
Query: 405 DLGKVVTKKFSN--METCVEIGESVRGEDVYIVQSGSGEINDNLMELLIMINACKIASAS 578
+L + + F++ + ++RG+ V + S S + E L +I A S
Sbjct: 122 ELRSISWRTFADGFPNLFISNAHTIRGQHVAFLASFSSP--SVIFEQLSIIYALPKLFIS 179
Query: 579 RVTAVIPCFPYA----RQDKKDKSRAPITXKLVANI-LSVSGADHIITMDLHASQIQGFF 743
T ++P FP +D+ D + A ++++NI +S G ++ D+HA Q + +F
Sbjct: 180 SFTLILPFFPTGTSERMEDEGDVATAFTLARILSNIPISRGGPSSLVIFDIHALQERFYF 239
>12_02_0699 +
22245933-22246213,22246493-22246575,22246844-22247125,
22248725-22248986,22250146-22251781,22251910-22252416
Length = 1016
Score = 31.5 bits (68), Expect = 1.00
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 638 QSPDHGQTRCQHPFSVWSRSHHHYGS 715
Q PDH TRC++ VW R H + S
Sbjct: 12 QKPDHPPTRCRYQAKVWFRRHCFFQS 37
>02_02_0467 - 10620976-10621299
Length = 107
Score = 30.3 bits (65), Expect = 2.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 638 QSPDHGQTRCQHPFSVWSRSHHHYGS 715
Q PDH TRC+ VW R H + S
Sbjct: 12 QKPDHPPTRCRSQAKVWFRRHCFFQS 37
>12_01_0829 +
7674416-7674471,7675043-7675129,7675210-7675250,
7675433-7675755
Length = 168
Score = 29.1 bits (62), Expect = 5.3
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +2
Query: 80 VGGWSSC-HPRRT*VQDTRRDKTSRVALRTLI 172
VG W SC HPRR V RRD L L+
Sbjct: 123 VGAWRSCWHPRRVDVLRDRRDDLRACELHRLV 154
>06_03_0099 + 16633928-16638213,16638299-16638386,16638823-16638950,
16640008-16640278
Length = 1590
Score = 29.1 bits (62), Expect = 5.3
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 620 RQKRQEQSPDHGQTRCQ-HPFSVWSRSHHHYGS 715
R+K++ +SP H + + HP +S+ HH +G+
Sbjct: 1554 RKKQKPESPPHAHPQGRNHPVKFFSKMHHMFGT 1586
>07_03_0352 + 17089666-17089982,17090326-17090410,17090674-17090913
Length = 213
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +2
Query: 602 LPVRAARQKRQEQSPDHGQTRCQHPFSVWSRSHHHYGS 715
LP + Q PDH RC+ VW R H + S
Sbjct: 12 LPKNLITRLGTPQKPDHPPIRCRSQAKVWFRRHCFFQS 49
>02_05_0181 -
26522849-26522932,26523053-26523184,26523263-26523329,
26523800-26524186,26524259-26524360,26524983-26525132,
26525552-26525636,26525743-26525769,26525858-26526116,
26526659-26526751,26526921-26527013,26527122-26527289,
26527436-26527594,26528214-26528273,26528392-26528487
Length = 653
Score = 28.3 bits (60), Expect = 9.3
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +2
Query: 617 ARQKRQEQSPDHGQTRCQHPFSVWSR 694
+ Q ++++PD +T C+ P VWS+
Sbjct: 487 SEQNSEDENPDSSRTACETPKWVWSK 512
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,497,440
Number of Sequences: 37544
Number of extensions: 447684
Number of successful extensions: 1081
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2682675460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -