Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_G11
         (903 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0217 + 15814303-15814905                                         30   2.2  
10_08_0328 - 16805296-16806121,16806493-16807274                       30   2.9  
02_04_0636 - 24648288-24648740,24648902-24649049,24650165-24650703     30   2.9  
08_01_0656 + 5652383-5653009,5653260-5653736,5654969-5655289,565...    29   5.1  
12_02_0030 + 12469707-12469902,12470337-12470658,12472208-124722...    29   6.7  

>12_02_0217 + 15814303-15814905
          Length = 200

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 56  SGSAAGLCQGYRVQRDRPNMWLGSRGPG 139
           +  AAG CQ  R +R    +WLGS G G
Sbjct: 166 AAGAAGFCQRRRRERRSATVWLGSSGRG 193


>10_08_0328 - 16805296-16806121,16806493-16807274
          Length = 535

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = +3

Query: 57  RAAQRDCARXTACNATAPTCGWGRVGPDATAGGVQRRRSAS 179
           +A+  D A  +A    AP CGW  V  DA AG V R R  S
Sbjct: 39  KASLTDVAALSAWTRAAPVCGWRGVACDA-AGLVARLRLPS 78


>02_04_0636 - 24648288-24648740,24648902-24649049,24650165-24650703
          Length = 379

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 24/84 (28%), Positives = 34/84 (40%)
 Frame = -2

Query: 320 SCLNIYLR*FVIYHIIQSSK*SPPLWICAFVWSRVVEASHVSKXGQSRGRATSLDAAGRR 141
           +CL+  +   V Y  +  ++ SPP  +CA  W R  +   V+    S G    L      
Sbjct: 271 ACLDPAMDVAVAYRGLALARASPPPRVCARGWGRTEQVPVVA----SSGNGVRLPG---- 322

Query: 140 IRAHATPATCWGGRVARGXPGTVP 69
              H   A  WGG VA     T+P
Sbjct: 323 FALHGLEADAWGGAVAFDVALTMP 346


>08_01_0656 +
           5652383-5653009,5653260-5653736,5654969-5655289,
           5655434-5655589,5656062-5656127,5656196-5656315
          Length = 588

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = -1

Query: 189 RPVQRPSDVAGRRRPSHPGPRDPSHMLGRSRCTRXPWHSPAALPECXXS*GXP 31
           R   RP+  A R+  S P P        RS C R  W +PA  P    + G P
Sbjct: 9   RKPSRPAGAALRKTGSAPSPTRSCTTSCRS-CGRGRWRAPACSPAAGATSGPP 60


>12_02_0030 +
           12469707-12469902,12470337-12470658,12472208-12472245,
           12472486-12473573
          Length = 547

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 113 MWLGSRGPGCDGRRRPATSLGLWTGRXYXRDSPRRLATRQT 235
           +W G    G  GRRR A+S   W      R   RR A R++
Sbjct: 123 LWAGGAARGGFGRRRGASSTHAWRPGAGRRKGRRRAARRRS 163


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,052,397
Number of Sequences: 37544
Number of extensions: 355096
Number of successful extensions: 1147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)