Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_G10
         (927 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    70   7e-11
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    63   8e-09
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    60   6e-08
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    57   6e-07
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    45   0.002
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0...    42   0.017
UniRef50_Q6MMS6 Cluster: Translation initiation factor IF-2; n=1...    35   2.6  
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ...    34   4.5  

>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 70.1 bits (164), Expect = 7e-11
 Identities = 36/41 (87%), Positives = 36/41 (87%)
 Frame = +2

Query: 437 SXSSLTDSLXXVXRLRXAVSAHSKAVIRLSTESGDNAGKNM 559
           S SSLTDSL  V RLR AVSAHSKAVIRLSTESGDNAGKNM
Sbjct: 19  SASSLTDSLRSVVRLRRAVSAHSKAVIRLSTESGDNAGKNM 59


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 63.3 bits (147), Expect = 8e-09
 Identities = 42/85 (49%), Positives = 46/85 (54%)
 Frame = +3

Query: 405 RGKAVCXLGXLPXPRSLTRCXRSFGCGXRYQLTQRR*YGYPQNQGITQEKTCXQKASKRP 584
           R   +C  G +P PRSLTR  RSFGCG RY+LT           G   E T  +  SK  
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT--------DGDGNFLEDT-RKTLSKEE 76

Query: 585 XTVKRPRCWRFSIGSAPLTSITKID 659
               RPR  RFSIGSAPLTSI K D
Sbjct: 77  I---RPRRSRFSIGSAPLTSIAKSD 98



 Score = 57.2 bits (132), Expect = 6e-07
 Identities = 29/49 (59%), Positives = 33/49 (67%)
 Frame = +1

Query: 652 KSTPQVXGGETRQDYKXTRRFPLETPSCALLFRXXPLTGIPVRLSPFGK 798
           KS  Q+ GGETRQDYK  RRFPL  PSCALLF   P  G+PV    +G+
Sbjct: 96  KSDAQISGGETRQDYKDPRRFPLVAPSCALLF--LPF-GLPVSFRCYGR 141


>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 60.5 bits (140), Expect = 6e-08
 Identities = 32/50 (64%), Positives = 32/50 (64%)
 Frame = +1

Query: 652 KSTPQVXGGETRQDYKXTRRFPLETPSCALLFRXXPLTGIPVRLSPFGKR 801
           K   QV GGETRQDYK TRRFPLE PSCALLFR   L   P    PF  R
Sbjct: 28  KIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRL---PDTCPPFSLR 74



 Score = 53.2 bits (122), Expect = 9e-06
 Identities = 36/80 (45%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
 Frame = +3

Query: 573 SKRPXTVKRPRCWRFSIGSAPLTSITKIDXSSXRWRNPTGL*XYQAFP---PGNSLVRSP 743
           SK+  T    R  RFSIGSAPLTSITKID               + FP   P  +L+  P
Sbjct: 2   SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 61

Query: 744 VPXLXAYRNTCPPFSLREAW 803
                   +TCPPFSLREAW
Sbjct: 62  ----CRLPDTCPPFSLREAW 77


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 57.2 bits (132), Expect = 6e-07
 Identities = 25/32 (78%), Positives = 26/32 (81%)
 Frame = +1

Query: 652 KSTPQVXGGETRQDYKXTRRFPLETPSCALLF 747
           KS  Q+ GGETRQDYK TRRFPL  PSCALLF
Sbjct: 64  KSDAQISGGETRQDYKDTRRFPLAAPSCALLF 95



 Score = 36.7 bits (81), Expect = 0.84
 Identities = 18/23 (78%), Positives = 19/23 (82%)
 Frame = +3

Query: 591 VKRPRCWRFSIGSAPLTSITKID 659
           V+ PR  RFSIGSAPLTSITK D
Sbjct: 44  VRGPRQSRFSIGSAPLTSITKSD 66


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 45.2 bits (102), Expect = 0.002
 Identities = 26/57 (45%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 381 CXNXSANXRGKAVCXLGXLPXPRSLTRCXRSFGCGXRYQL-TQRR*YGYPQNQGITQ 548
           C    A  R +AV  L  LP  RS TRC RS GCG      +  R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_UPI00015C640B Cluster: hypothetical protein
           CKO_pCKO2p07168; n=1; Citrobacter koseri ATCC
           BAA-895|Rep: hypothetical protein CKO_pCKO2p07168 -
           Citrobacter koseri ATCC BAA-895
          Length = 99

 Score = 42.3 bits (95), Expect = 0.017
 Identities = 21/49 (42%), Positives = 26/49 (53%)
 Frame = -2

Query: 812 ERRPRFPKGERRTGIPVSGQXRNRRAHEGVSRGKRLVXL*SCRVSPPXT 666
           E+ PRFPKG++   +    Q RNRRAHEG +  K    L      PP T
Sbjct: 51  EKAPRFPKGKKAEQVSGKRQGRNRRAHEGAAGEKSPASLSPVGFRPPLT 99


>UniRef50_Q6MMS6 Cluster: Translation initiation factor IF-2; n=1;
           Bdellovibrio bacteriovorus|Rep: Translation initiation
           factor IF-2 - Bdellovibrio bacteriovorus
          Length = 975

 Score = 35.1 bits (77), Expect = 2.6
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -1

Query: 840 RMELTXXXMRKAPTLPEGRKADRYSGKRXGSEQESARGSFQGETPGXFIVLSGFA-TXDL 664
           RM+L+     +AP  P+G +       R G EQ  A  SF G+ PG F   +G A T ++
Sbjct: 232 RMDLSRV-QSQAPQRPQGERPAGGFTPRAGGEQRGASASFTGQRPGGFNRPAGGAPTRNI 290

Query: 663 RXRFL 649
           R  F+
Sbjct: 291 RTGFV 295


>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
           Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
           Beggiatoa sp. SS
          Length = 114

 Score = 34.3 bits (75), Expect = 4.5
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +1

Query: 652 KSTPQVXGGETRQDYKXTRRFPLETPSCALLF 747
           K  PQ    +T+ +YK T  FPL++PS +LLF
Sbjct: 81  KIYPQFKNTQTQHNYKYTTPFPLQSPSYSLLF 112


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 602,185,888
Number of Sequences: 1657284
Number of extensions: 9352609
Number of successful extensions: 16902
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16884
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 85260991088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)