Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_G09
         (909 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.72 
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   2.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   3.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   5.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   6.7  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   8.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   8.9  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   8.9  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 0.72
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 123 PRLASGCKPCPINTRCCYCPERNL 194
           P +   CK C   T+CC+  +  L
Sbjct: 431 PPIGCECKTCNSKTKCCFAQDDGL 454


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 539 VTGPTLYLPVMLKNSWVSLAPLL 607
           +TG T  L  ML +SWVSL  LL
Sbjct: 99  LTGGTWELGPMLCDSWVSLDILL 121


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
 Frame = +1

Query: 463 RTCVGGRAFDMVCPPGL---AFNP 525
           +TC+ GRAF ++   G    AFNP
Sbjct: 299 KTCISGRAFQVLTWLGYSNSAFNP 322


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = -1

Query: 504 RAYHVESTTTYACSVLATIGGRSVR--MFEDAILVRAIRCCLGRLD--APSSYTCH 349
           R   VE +  Y C V  ++GG SV   +   A L   I      +D   P+++TC+
Sbjct: 275 REARVEDSGKYLCIVNNSVGGESVETVLTVTAPLGAEIEPSTQTIDFGRPATFTCN 330



 Score = 22.6 bits (46), Expect = 5.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 501 PAGTSIQSRLQPL*LGRPCTF 563
           P G  I+   Q +  GRP TF
Sbjct: 307 PLGAEIEPSTQTIDFGRPATF 327


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 609 RSRGASETQEFFSITGRYKVGPVTAAEVW 523
           R+ G   ++  FS+  + K  PV  AE+W
Sbjct: 535 RTLGNQNSEMCFSLKFKNKKLPVFLAEIW 563


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 556 VPSCDAEKFLGFTCPPAPLDAI 621
           VPS   EKFLG+  PP   D +
Sbjct: 22  VPSM-REKFLGWNVPPEYSDLV 42


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 552 PCTFL*C*KILGFHLPPCS 608
           PC  +    +LGF LPP S
Sbjct: 241 PCVLIASMAVLGFTLPPDS 259


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 556 VPSCDAEKFLGFTCPPAPLDAI 621
           VPS   EKFLG+  PP   D +
Sbjct: 22  VPSM-REKFLGWNVPPEYSDLV 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,681
Number of Sequences: 438
Number of extensions: 5435
Number of successful extensions: 21
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)