Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_G07
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    27   3.6  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    27   3.6  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   4.8  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    27   4.8  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    26   6.3  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   6.3  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    26   6.3  
SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces p...    26   8.3  

>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +3

Query: 498 IDLGKYDNDLQPTCLSDFERNAVAYCSGSTPTEAQSTPQANPDGKPSEEQLMKV 659
           ++LG  +  + P CL D   NAVA     T   A        + K SE+   K+
Sbjct: 12  VNLGDSNRAVSPFCLPDCSENAVAQTRSKTLDNAALDLPYVGNRKKSEQDFFKM 65


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 436 SQVIPSVFISIPSLMYLFSNFFESSG 359
           S +  S + SIPS+  + S+FF++SG
Sbjct: 826 SSIASSSYTSIPSISSIASSFFDASG 851


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 176 GIATTKNHSNRLTRKIPMRTQFLEDFLHQRRIS 274
           GIA TK HS +         Q+L +F+HQR+ S
Sbjct: 489 GIALTKLHSQQYNESTLF--QYLSEFVHQRQKS 519


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = -3

Query: 586 VEPLQYATAFLSKSDRQVG*R--SLSYLPRSISLILLFGT-SFVCGNFCSI*SSQVIPSV 416
           +  L+ ATA +S   + +  +   ++  P + +L+LLF    F+     S  S+ VI SV
Sbjct: 122 ISTLEIATAIISSVCKPILGKFSDITSRPMTYTLVLLFYVIGFIVVASSSTISAYVIGSV 181

Query: 415 FISIPS 398
           FISI S
Sbjct: 182 FISIGS 187


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -2

Query: 446 NIIIASNTERLHFYSIINVSVFKLF*ELWRIYVANSVS*SKCCLHFFLTHTLRRFGNLKF 267
           N+  A  +   + +S+INVSVF  F EL  I +  S S     +   L +    +GN+  
Sbjct: 437 NVSFAYPSRDENLFSLINVSVFIPFGELVHI-IGPSGSGKSTFISLLLRYFSPTYGNIYL 495

Query: 266 D 264
           D
Sbjct: 496 D 496


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 564 VAYCSGSTPTEAQSTPQANPDGKP 635
           +AY  G+ P   Q+ P  NP G P
Sbjct: 37  MAYHPGNAPLFTQAPPHTNPQGPP 60


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 1/107 (0%)
 Frame = +3

Query: 339 TIGNIDSPELSKKF-ENRYINDGIEMKTLGITCDDYIEQKLPHTNEVPNSRISDIDLGKY 515
           T  N+   + SK+F EN    D       G     +IE+K P   E     +  +    Y
Sbjct: 217 TDDNVTCSDSSKEFYENAGTKDKTYQSYPGFYHSLHIEKK-PEVYEY----LDKVAAWIY 271

Query: 516 DNDLQPTCLSDFERNAVAYCSGSTPTEAQSTPQANPDGKPSEEQLMK 656
           ++      +   +  AV +     PT   S P A+P G P EE+  K
Sbjct: 272 EHSKPSETVKSEQETAVEH---PKPTATTSAPSASPTGVPVEEESHK 315


>SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 257

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 189 VVAIPLIGNILCENDRKQLDIFSDNVIHSYRWKF 88
           VVAI  +G       ++QL +  +NVI S+ + F
Sbjct: 45  VVAIGFVGGSDLSKQQEQLSVNGENVIDSFDYAF 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,443,099
Number of Sequences: 5004
Number of extensions: 71533
Number of successful extensions: 201
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)