Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_G07
         (894 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024809-5|AAF59544.3|  287|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z69383-2|CAA93408.2|  318|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF039047-15|AAM15588.1| 1040|Caenorhabditis elegans Human mlk (m...    29   4.5  
AF039047-14|AAM15589.1|  978|Caenorhabditis elegans Human mlk (m...    29   4.5  
Z83731-9|CAH10802.1| 1364|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z81505-5|CAH10795.1| 1364|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AL023835-9|CAA19493.2|  397|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AC024809-5|AAF59544.3|  287|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.5 protein.
          Length = 287

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = -1

Query: 165 NILCENDRKQLDIFSDNVIHSYRWKF*NI*KMCRKSFPTISIKKR 31
           NI C   R QL     N IH+YR     + K C+K+  T+  KKR
Sbjct: 174 NIFCPVCRAQLT--DSNTIHNYRENVQLMIKNCKKNQKTLKNKKR 216


>Z69383-2|CAA93408.2|  318|Caenorhabditis elegans Hypothetical
           protein F13E9.5 protein.
          Length = 318

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 158 KILPINGIATTKNHSNRLTRKIPMRTQFLEDFLHQRRIS 274
           K LP+     TKN++  +   I  +  F ED + Q+R+S
Sbjct: 116 KDLPVTNRKATKNYTRAVKNAINQKADFEEDEVDQKRLS 154


>AF039047-15|AAM15588.1| 1040|Caenorhabditis elegans Human mlk (mixed
            lineage kinase)homolog protein 1, isoform a protein.
          Length = 1040

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 41/166 (24%), Positives = 61/166 (36%), Gaps = 8/166 (4%)
 Frame = +3

Query: 336  DTIGNIDSPELSKKFENRYINDGIEMKTLGITCDDYIE--QKL---PHTNEVPNSRISDI 500
            D  GNI           R IN   +   +G  CDDYI   QK    P   EV NS  S+ 
Sbjct: 849  DYYGNISGQNYEGFGHGRSINQSTQYYPVGGGCDDYIPIVQKTVIKPTVGEVGNSPYSE- 907

Query: 501  DLGKYDNDLQPTCLSDFERNAVAYCSGSTPTEAQSTPQANPDG---KPSEEQLMKVFHVL 671
            ++     ++Q       ++N       + P + QS       G    P +EQL  + + L
Sbjct: 908  NIRCATRNVQNPQYIQCKKNQNPRRIPALPMKIQSESNLVTSGMVFTPRDEQLNGIGNSL 967

Query: 672  SESMPLLFGETXGXIPSTVXI*FFVTIXXERLRVGLSPMXSKSPCL 809
            S        +    +P  V      ++     RV +SP    +P L
Sbjct: 968  SSLSLNEPPDIPAPLPPVVTYPIPASLISPSNRVSMSPPTRMAPVL 1013


>AF039047-14|AAM15589.1|  978|Caenorhabditis elegans Human mlk (mixed
            lineage kinase)homolog protein 1, isoform b protein.
          Length = 978

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 41/166 (24%), Positives = 61/166 (36%), Gaps = 8/166 (4%)
 Frame = +3

Query: 336  DTIGNIDSPELSKKFENRYINDGIEMKTLGITCDDYIE--QKL---PHTNEVPNSRISDI 500
            D  GNI           R IN   +   +G  CDDYI   QK    P   EV NS  S+ 
Sbjct: 787  DYYGNISGQNYEGFGHGRSINQSTQYYPVGGGCDDYIPIVQKTVIKPTVGEVGNSPYSE- 845

Query: 501  DLGKYDNDLQPTCLSDFERNAVAYCSGSTPTEAQSTPQANPDG---KPSEEQLMKVFHVL 671
            ++     ++Q       ++N       + P + QS       G    P +EQL  + + L
Sbjct: 846  NIRCATRNVQNPQYIQCKKNQNPRRIPALPMKIQSESNLVTSGMVFTPRDEQLNGIGNSL 905

Query: 672  SESMPLLFGETXGXIPSTVXI*FFVTIXXERLRVGLSPMXSKSPCL 809
            S        +    +P  V      ++     RV +SP    +P L
Sbjct: 906  SSLSLNEPPDIPAPLPPVVTYPIPASLISPSNRVSMSPPTRMAPVL 951


>Z83731-9|CAH10802.1| 1364|Caenorhabditis elegans Hypothetical
           protein F16A11.3b protein.
          Length = 1364

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 408 EMKTLGITCDDYIEQKLPHTNEVPNSRISDIDLGKYDNDLQPTCLSD 548
           ++  LG+  DDY+E   P  N   +S  +D D    DND + + ++D
Sbjct: 567 DLTKLGLEDDDYMENSGPKFNTDEDS-TNDSDSDDEDNDFEKSFVAD 612


>Z81505-5|CAH10795.1| 1364|Caenorhabditis elegans Hypothetical
           protein F16A11.3b protein.
          Length = 1364

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 408 EMKTLGITCDDYIEQKLPHTNEVPNSRISDIDLGKYDNDLQPTCLSD 548
           ++  LG+  DDY+E   P  N   +S  +D D    DND + + ++D
Sbjct: 567 DLTKLGLEDDDYMENSGPKFNTDEDS-TNDSDSDDEDNDFEKSFVAD 612


>AL023835-9|CAA19493.2|  397|Caenorhabditis elegans Hypothetical
           protein Y37A1B.10 protein.
          Length = 397

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 387 RYINDGIEMKTLGITCDDYIEQKLPHTNEVPNSRISD 497
           R + DG++     + C++ ++ ++PHT  V NSRI D
Sbjct: 194 RVVEDGLQAS---LYCEEPLDFEVPHTYIVGNSRIFD 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,957,380
Number of Sequences: 27780
Number of extensions: 396276
Number of successful extensions: 1064
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)