Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_G06
         (933 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/51 (31%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
 Frame = +3

Query: 507 PXPKKKXKWXGPXP-PXXXGXXLLGGEXXPPXXXXXAHFXPPPXXXPPKGV 656
           P P        P P P      ++GG   PP     A   PPP   PP  V
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAV 785



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
 Frame = +3

Query: 468 PXPXP-PLXGGXXXPXPKKKXKWXGPXPP 551
           P P P P+ GG   P P       GP PP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 21/74 (28%), Positives = 21/74 (28%), Gaps = 2/74 (2%)
 Frame = +1

Query: 718 TPPPPXGXSFFLXPPRGXGPXFF-SXXXGGSGPPPXPXGXPXXPXXXXXXXX-PXXXXXX 891
           TPP P   S     P    P    S   G    PP P   P  P         P      
Sbjct: 414 TPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAA 473

Query: 892 PPXPXXPAPPXXXP 933
           P  P  PAP    P
Sbjct: 474 PAPPPAPAPAPAAP 487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,927,515
Number of Sequences: 5004
Number of extensions: 25663
Number of successful extensions: 37
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)