Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_G05
         (902 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    32   0.72 
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    30   2.2  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   3.8  

>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 31.9 bits (69), Expect = 0.72
 Identities = 21/88 (23%), Positives = 24/88 (27%)
 Frame = +3

Query: 405 PPXKXPPPXGXXGFFFXXXXXSPPXXPXAPGXXXXXXVXPPPKGGNXXSXKXGXXPXKNL 584
           PP   PPP     F F          P  P         PPP G N         P  + 
Sbjct: 57  PPPPGPPPPHQPQFNFGPGPPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPPPPPPPPSP 116

Query: 585 LTKGPQXXRNPKXXPXXXFSPXXPPPXK 668
               P     P   P    +   PPP +
Sbjct: 117 PPSAPPPPPPPPTQPPPREAQLAPPPPR 144


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 24/87 (27%), Positives = 25/87 (28%), Gaps = 1/87 (1%)
 Frame = +3

Query: 405 PPXKXPPPXGXXGFFFXXXXXSPPXXPXAPGXXXXXXVXPPPKGGNXXSXKXGXXPXKN- 581
           PP   PPP G    F       PP  P  P         PPP             P  N 
Sbjct: 547 PPPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPP---------PPPPPLPNC 597

Query: 582 LLTKGPQXXRNPKXXPXXXFSPXXPPP 662
           L+   P     P   P     P  PPP
Sbjct: 598 LVPSPPPPPPPPPILPNRSVPPPPPPP 624


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 17/46 (36%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
 Frame = +3

Query: 405 PPXKXPPPXGXXGFFFXXXXXSP-PXXPXAPGXXXXXXVXPPPKGG 539
           PP   PPP    G         P P  P  PG        PPPKGG
Sbjct: 340 PPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGG 385


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,698,617
Number of Sequences: 37544
Number of extensions: 184031
Number of successful extensions: 724
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)