Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_G05
(902 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
K03205-1|AAA60186.1| 198|Homo sapiens PRB1 protein. 32 2.5
BC141917-1|AAI41918.1| 198|Homo sapiens PRB1 protein protein. 32 2.5
BC128191-1|AAI28192.1| 183|Homo sapiens PRB4 protein protein. 32 3.3
X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage f... 31 5.7
X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein. 31 5.7
K02575-1|AAA36502.1| 173|Homo sapiens protein ( Human salivary ... 31 5.7
AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and polyadenyl... 31 5.7
>K03205-1|AAA60186.1| 198|Homo sapiens PRB1 protein.
Length = 198
Score = 32.3 bits (70), Expect = 2.5
Identities = 27/107 (25%), Positives = 36/107 (33%), Gaps = 3/107 (2%)
Frame = +3
Query: 405 PPXKX--PPPXGXXGFFFXXXXXSPPXXPXAPGXXXXXXVXPPPKGGNXXSXKXGXXPXK 578
PP K PPP G SPP P P PPP+GGN +
Sbjct: 73 PPGKPQGPPPQGDKS----RSPRSPPGKPQGPPPQGGKPQGPPPQGGNKPQGPPPPGKPQ 128
Query: 579 NLLTKGPQXXRNPKXXPXXXFSPXXPPPXK-TXKKXXPQXXGAXPQR 716
+G ++ + P P PP + + P G PQ+
Sbjct: 129 GPPAQGGSKSQSARAPPG---KPQGPPQQEGNNPQGPPPPAGGNPQQ 172
>BC141917-1|AAI41918.1| 198|Homo sapiens PRB1 protein protein.
Length = 198
Score = 32.3 bits (70), Expect = 2.5
Identities = 27/107 (25%), Positives = 36/107 (33%), Gaps = 3/107 (2%)
Frame = +3
Query: 405 PPXKX--PPPXGXXGFFFXXXXXSPPXXPXAPGXXXXXXVXPPPKGGNXXSXKXGXXPXK 578
PP K PPP G SPP P P PPP+GGN +
Sbjct: 73 PPGKPQGPPPQGDKS----RSPRSPPGKPQGPPPQGGKPQGPPPQGGNKPQGPLPPGKPQ 128
Query: 579 NLLTKGPQXXRNPKXXPXXXFSPXXPPPXK-TXKKXXPQXXGAXPQR 716
+G ++ + P P PP + + P G PQ+
Sbjct: 129 GPPAQGGSKSQSARAPPG---KPQGPPQQEGNNPQGPPPPAGGNPQQ 172
>BC128191-1|AAI28192.1| 183|Homo sapiens PRB4 protein protein.
Length = 183
Score = 31.9 bits (69), Expect = 3.3
Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Frame = +3
Query: 522 PPPKGGNXXSXK-XGXXPXKNLLTKGPQXXRNPKXXPXXXFSPXXP--PPXKTXKKXXPQ 692
PPP+GGN K G + +GP P+ P +P P PP + P
Sbjct: 102 PPPQGGNQSQGKPQGPPQQEGNKPQGPPPPGKPQGPPPPGGNPQQPQAPPAGKPQGPPPP 161
Query: 693 XXGAXPQR 716
G P R
Sbjct: 162 PQGGRPPR 169
>X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage
factor I 68 kDa subunit protein.
Length = 551
Score = 31.1 bits (67), Expect = 5.7
Identities = 25/81 (30%), Positives = 26/81 (32%)
Frame = +3
Query: 420 PPPXGXXGFFFXXXXXSPPXXPXAPGXXXXXXVXPPPKGGNXXSXKXGXXPXKNLLTKGP 599
PPP G PP P PG V PPP G G P +L G
Sbjct: 226 PPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAG---PPNRGDRPPPPVLFPG- 281
Query: 600 QXXRNPKXXPXXXFSPXXPPP 662
Q P P P PPP
Sbjct: 282 QPFGQP---PLGPLPPGPPPP 299
>X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein.
Length = 551
Score = 31.1 bits (67), Expect = 5.7
Identities = 25/81 (30%), Positives = 26/81 (32%)
Frame = +3
Query: 420 PPPXGXXGFFFXXXXXSPPXXPXAPGXXXXXXVXPPPKGGNXXSXKXGXXPXKNLLTKGP 599
PPP G PP P PG V PPP G G P +L G
Sbjct: 226 PPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAG---PPNRGDRPPPPVLFPG- 281
Query: 600 QXXRNPKXXPXXXFSPXXPPP 662
Q P P P PPP
Sbjct: 282 QPFGQP---PLGPLPPGPPPP 299
>K02575-1|AAA36502.1| 173|Homo sapiens protein ( Human salivary
proline-rich protein 1 gene, segment 1. ).
Length = 173
Score = 31.1 bits (67), Expect = 5.7
Identities = 21/87 (24%), Positives = 28/87 (32%)
Frame = +3
Query: 483 PXAPGXXXXXXVXPPPKGGNXXSXKXGXXPXKNLLTKGPQXXRNPKXXPXXXFSPXXPPP 662
P P PPP+GGN + +G + R+P+ P P PPP
Sbjct: 30 PQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGKRSRSPRSPPG---KPQGPPP 86
Query: 663 XKTXKKXXPQXXGAXPQRXLKNSGVSP 743
+ P PQ G P
Sbjct: 87 QGGNQPQGPPPPPGKPQGPPPQGGNKP 113
>AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and
polyadenylation specific factor 6, 68 kD subunit variant
protein.
Length = 551
Score = 31.1 bits (67), Expect = 5.7
Identities = 25/81 (30%), Positives = 26/81 (32%)
Frame = +3
Query: 420 PPPXGXXGFFFXXXXXSPPXXPXAPGXXXXXXVXPPPKGGNXXSXKXGXXPXKNLLTKGP 599
PPP G PP P PG V PPP G G P +L G
Sbjct: 226 PPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAG---PPNRGDRPPPPVLFPG- 281
Query: 600 QXXRNPKXXPXXXFSPXXPPP 662
Q P P P PPP
Sbjct: 282 QPFGQP---PLGPLPPGPPPP 299
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,346,886
Number of Sequences: 237096
Number of extensions: 1057205
Number of successful extensions: 2477
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2415
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11659288620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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