Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_G05
         (902 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    33   0.37 
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    33   0.37 
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    33   0.37 
AL033514-8|CAA22097.2|  715|Caenorhabditis elegans Hypothetical ...    29   6.0  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 22/86 (25%), Positives = 25/86 (29%)
 Frame = +3

Query: 405 PPXKXPPPXGXXGFFFXXXXXSPPXXPXAPGXXXXXXVXPPPKGGNXXSXKXGXXPXKNL 584
           PP   PPP    G        SPP  P   G      + PP  GG+      G  P    
Sbjct: 275 PPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPR 334

Query: 585 LTKGPQXXRNPKXXPXXXFSPXXPPP 662
             +       P   P     P   PP
Sbjct: 335 QKRQAPERSPPTGSPPTGSPPTGRPP 360



 Score = 29.1 bits (62), Expect = 4.5
 Identities = 20/83 (24%), Positives = 25/83 (30%), Gaps = 3/83 (3%)
 Frame = +3

Query: 471 PPXXPXAPGXXXXXXVXPPPKGGNXXSXKXGXXPXKNLLTKGPQXXRNPKXXPXXXFSPX 650
           PP    +P         PPP  G+    + G  P     +  P         P     P 
Sbjct: 240 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 299

Query: 651 XPPP---XKTXKKXXPQXXGAXP 710
            PPP     T     PQ  G+ P
Sbjct: 300 PPPPRGSPPTGSLPPPQAGGSPP 322


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 22/86 (25%), Positives = 25/86 (29%)
 Frame = +3

Query: 405 PPXKXPPPXGXXGFFFXXXXXSPPXXPXAPGXXXXXXVXPPPKGGNXXSXKXGXXPXKNL 584
           PP   PPP    G        SPP  P   G      + PP  GG+      G  P    
Sbjct: 296 PPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPR 355

Query: 585 LTKGPQXXRNPKXXPXXXFSPXXPPP 662
             +       P   P     P   PP
Sbjct: 356 QKRQAPERSPPTGSPPTGSPPTGRPP 381



 Score = 29.1 bits (62), Expect = 4.5
 Identities = 20/83 (24%), Positives = 25/83 (30%), Gaps = 3/83 (3%)
 Frame = +3

Query: 471 PPXXPXAPGXXXXXXVXPPPKGGNXXSXKXGXXPXKNLLTKGPQXXRNPKXXPXXXFSPX 650
           PP    +P         PPP  G+    + G  P     +  P         P     P 
Sbjct: 261 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 320

Query: 651 XPPP---XKTXKKXXPQXXGAXP 710
            PPP     T     PQ  G+ P
Sbjct: 321 PPPPRGSPPTGSLPPPQAGGSPP 343


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 22/86 (25%), Positives = 25/86 (29%)
 Frame = +3

Query: 405 PPXKXPPPXGXXGFFFXXXXXSPPXXPXAPGXXXXXXVXPPPKGGNXXSXKXGXXPXKNL 584
           PP   PPP    G        SPP  P   G      + PP  GG+      G  P    
Sbjct: 281 PPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPR 340

Query: 585 LTKGPQXXRNPKXXPXXXFSPXXPPP 662
             +       P   P     P   PP
Sbjct: 341 QKRQAPERSPPTGSPPTGSPPTGRPP 366



 Score = 29.1 bits (62), Expect = 4.5
 Identities = 20/83 (24%), Positives = 25/83 (30%), Gaps = 3/83 (3%)
 Frame = +3

Query: 471 PPXXPXAPGXXXXXXVXPPPKGGNXXSXKXGXXPXKNLLTKGPQXXRNPKXXPXXXFSPX 650
           PP    +P         PPP  G+    + G  P     +  P         P     P 
Sbjct: 246 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 305

Query: 651 XPPP---XKTXKKXXPQXXGAXP 710
            PPP     T     PQ  G+ P
Sbjct: 306 PPPPRGSPPTGSLPPPQAGGSPP 328


>AL033514-8|CAA22097.2|  715|Caenorhabditis elegans Hypothetical
           protein Y75B8A.8 protein.
          Length = 715

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 491 GXGXXGGGXXXGPKKKPPXPXXXG 420
           G G  GGG   GP ++PP P   G
Sbjct: 14  GAGGGGGGPPRGPPQQPPQPQGGG 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,377,716
Number of Sequences: 27780
Number of extensions: 121553
Number of successful extensions: 371
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)