Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_G03
         (941 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    31   1.8  
06_03_0218 + 18219956-18220555                                         31   1.8  
09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254     30   3.1  
08_01_0156 - 1233431-1233925                                           29   7.1  
07_01_0306 - 2188056-2188588,2188698-2188846,2189652-2189704           28   9.4  
03_06_0149 - 31987183-31987630,31987813-31987874                       28   9.4  
03_04_0061 - 16949038-16950006                                         28   9.4  

>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +1

Query: 151 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 309
           CWR  +        T  D Q    +    +KD    P + PSC L+F P   P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335


>06_03_0218 + 18219956-18220555
          Length = 199

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 21/62 (33%), Positives = 26/62 (41%)
 Frame = -1

Query: 428 GGFVHTAQLGANDLHRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKRL 249
           GG     ++ A    +T  P     R R   R E  G  + KR+GR R    G  RGKR 
Sbjct: 82  GGLTEGEEVAARPREKTARPDG--ARARRERRLEAAG--AEKREGRRRGGSSGGLRGKRR 137

Query: 248 VS 243
            S
Sbjct: 138 AS 139


>09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254
          Length = 425

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = -3

Query: 681 VVAGSRATNSFSEGNWLQQSADTKYCSSSVAVVRPPLQELCSTAYIPRSA 532
           V A     N  S  +  Q S   K   SSVA   PP + L ST  +PR++
Sbjct: 159 VTANPPPRNVVSTTSVPQNSIAAKLACSSVAAASPPPRNLVSTTPVPRNS 208


>08_01_0156 - 1233431-1233925
          Length = 164

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = -1

Query: 404 LGANDLHRTEIPTA*AMRKRHASRREK--GGQVSGKRQGRNRRAHEGASRGKRLVSL*SC 231
           LG  D   TE+  A A     A+R E+  GG   G R G   RA +   +G     +   
Sbjct: 89  LGDADATATEVDAAAAAEAEAAARGERGDGGGDGGGRAGGRGRARDEREKGAAADRVLGV 148

Query: 230 RVSPPLT 210
           R SP ++
Sbjct: 149 RASPTVS 155


>07_01_0306 - 2188056-2188588,2188698-2188846,2189652-2189704
          Length = 244

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 696 KTRTRVVAGSRATNSFSEGNWLQQS 622
           K +T +  G+RA  SF   NWLQ S
Sbjct: 92  KRQTTISIGNRAKTSFWRDNWLQNS 116


>03_06_0149 - 31987183-31987630,31987813-31987874
          Length = 169

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 359 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRG 258
           A+ + H   R +   +  +R+GR R AHEG   G
Sbjct: 76  AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIG 109


>03_04_0061 - 16949038-16950006
          Length = 322

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 233 RTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGA 349
           RT+K PG+   ++PRA+  + P  Y   VR +   +R A
Sbjct: 255 RTMKGPGLGGARVPRAVFRASPRRYYAAVRTARKARRSA 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,996,341
Number of Sequences: 37544
Number of extensions: 499956
Number of successful extensions: 1597
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1597
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2706104940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)