Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_G01
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...   223   4e-59
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...   173   4e-44
SPAC15E1.06 |vps29||retromer complex subunit Vps29|Schizosacchar...    28   1.6  
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    27   3.6  
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    27   4.8  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    27   4.8  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    27   4.8  
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    26   6.3  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   8.3  

>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score =  223 bits (544), Expect = 4e-59
 Identities = 104/210 (49%), Positives = 141/210 (67%)
 Frame = +3

Query: 219 WNNVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILHSRGL 398
           W +V MGPPD I GITEAYKKD   KK+NLG G YRDD GKP+VLPSVR+AE  L S+ L
Sbjct: 40  WADVPMGPPDPIFGITEAYKKDGDVKKMNLGAGTYRDDAGKPYVLPSVRQAETELLSQKL 99

Query: 399 NHEYAPISGEATYTDAVAKLAFGEDSPVIKNKSNCTVQTLSGTGALRLGLEFITKHYAKA 578
           + EYAPI+G  ++     KLA+G+    IK++   + Q++SGTGAL +   F+   Y  +
Sbjct: 100 DKEYAPITGIPSFRVQATKLAYGDVYESIKDRL-VSAQSISGTGALCIAANFLASFY-PS 157

Query: 579 KEIWLPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDLQGALXDISKIPEGSIILLHAC 758
           K I++  PTWGNH  + +   L  K Y+Y+DP T G D++G L D++  P+GSIILLHAC
Sbjct: 158 KTIYVSDPTWGNHKNVFSRAGLTVKSYKYYDPATRGLDIKGMLSDLTSAPDGSIILLHAC 217

Query: 759 AHNPTGVDPKPNDWEQLSKVIKERKLFPFM 848
           AHNPTGVDP    W+ + K ++++  F  +
Sbjct: 218 AHNPTGVDPTKAQWDDILKTMQKKNHFALL 247


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score =  173 bits (420), Expect = 4e-44
 Identities = 83/206 (40%), Positives = 117/206 (56%), Gaps = 3/206 (1%)
 Frame = +3

Query: 225 NVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILHSRG-LN 401
           N++    D I  +   Y +D  PKKVN+ VGAYRDD GKP++LP+V+KA +I+  +   N
Sbjct: 8   NIEEAKADAIFKLNAQYHQDEDPKKVNMSVGAYRDDTGKPWILPAVKKASKIVEEQASFN 67

Query: 402 HEYAPISGEATYTDAVAKLAFGEDSPVIKNKSNCTVQTLSGTGALRLGLEFITKHYAK-- 575
           HEY PI+G   +T A A++ F  +  ++      ++Q++SGTGA  L   FI   Y K  
Sbjct: 68  HEYLPIAGLPRFTKAAAEVLFRPNPHLLSEDRVASMQSVSGTGANFLAASFIETFYVKHT 127

Query: 576 AKEIWLPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDLQGALXDISKIPEGSIILLHA 755
              +++  PTW  H  +   L +    Y Y+D K   FD +G L  I   PEGSI LLHA
Sbjct: 128 GAHVYISNPTWPVHRTLWEKLGVTVDTYPYWDAKNRSFDYEGMLSTIKSAPEGSIFLLHA 187

Query: 756 CAHNPTGVDPKPNDWEQLSKVIKERK 833
           CAHNPTG+DP    W  + + +  RK
Sbjct: 188 CAHNPTGIDPTREQWLSIFESLLSRK 213


>SPAC15E1.06 |vps29||retromer complex subunit
           Vps29|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 757 HACNRIMEPSGIFDISSSAPCKSKPLVLGS 668
           H C+ +    G FDISS AP   K + LGS
Sbjct: 51  HVCSDLKLVKGAFDISSKAPIAGK-ITLGS 79


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 665 VTVFLVRQVEGVADLRVVSPSRRREPDLLCLSVVFRYEL 549
           +T  L++ + G+   RV S   RR P +LC S++  + L
Sbjct: 80  LTGILIQPIAGILSDRVNSRIGRRRPFMLCASLLGTFSL 118


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -3

Query: 377 FFCLSDRRQNKWFSLIISICSNTKIYFFRMCVLLVC 270
           F C+ D R N   +LI S CS +   FF   +LLVC
Sbjct: 224 FGCVKDGRLNLNKALICSTCSISAALFF--ILLLVC 257


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = -3

Query: 341 FSLIISICS-NTKIYFFRMCVLLV 273
           F+L+  +CS N+K++FFR  VL +
Sbjct: 564 FALVDELCSLNSKLWFFRKSVLTI 587


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -3

Query: 377 FFCLSDRRQNKWFSLIISICSNTKIYFFRMCVLLVC 270
           F C+ D R N   +LI S CS +   FF   +LLVC
Sbjct: 214 FGCVKDGRLNLNKALICSTCSISAALFF--ILLLVC 247


>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -2

Query: 834 ISFL*SPWKVVPS-RWAWGQHRWGCVRTRATE*WNLREFLIYXRVLPAN-RNHWSW 673
           + ++ S  KV P   W +   RW C+       WN  E +I  ++L A+ RN   W
Sbjct: 94  LKYVLSKMKVFPKVYWIFNHRRW-CLENAPYPNWNY-EMMITEKLLSADARNFHGW 147


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -1

Query: 805 CSQSLGLGSTPVGLCAHACNRIMEPSGIFDIS-SSAPCK 692
           C  SLG+GS   G+C  A  +  + +    +S  S  CK
Sbjct: 406 CQDSLGMGSCASGVCTSASRQCKKLTNFSSLSCHSDSCK 444


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,751,363
Number of Sequences: 5004
Number of extensions: 83998
Number of successful extensions: 230
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)