Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_G01
         (895 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    27   0.31 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   2.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.8  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   6.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.6  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   6.6  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 29/104 (27%), Positives = 49/104 (47%)
 Frame = -1

Query: 340 FPSSSLYAPTPRFTFLGCVSFLYASVMPKITSGGPI*TLFHQVLLALRPVQPTIVSTLLG 161
           F + +L  PT   +FL CV   Y   +P     G   TL   +LL+L  V   +VS +L 
Sbjct: 235 FYTVNLILPTVLISFL-CVLVFY---LP--AEAGEKVTLGISILLSL-VVFLLLVSKILP 287

Query: 160 LSTWVVNFFNT*AIFTKLSNTGKIITNYVVLLKDEECPKXLRIP 29
            ++ V+       +FT + NT  I+   +++  +   P+  R+P
Sbjct: 288 PTSLVLPLIAKYLLFTFIMNTVSILVTVIIINWNFRGPRTHRMP 331


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 346 NGFPSSSLYAPTPRFTFLGCVSFLYASVM 260
           N  P  S Y       FLGC  FL+A+++
Sbjct: 283 NSLPKVS-YIKASEIWFLGCTIFLFAAMV 310


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 233 DGSARCNLRHYRSIQEG 283
           DG AR N+ H++ I+ G
Sbjct: 535 DGPARYNIIHFKQIEPG 551


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -1

Query: 112 KLSNTGKIITNYVVLLKDE 56
           ++   G+I+TNY+  + DE
Sbjct: 32  RILQNGRILTNYIKCMLDE 50


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -3

Query: 467 SKSQFSYSISICGLTTDGSILMIESSTMENFFCLS 363
           S S  SY   IC LT    +  + + T  N F LS
Sbjct: 513 SLSDGSYFGEICLLTNARRVASVRAETYCNLFSLS 547


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -3

Query: 467 SKSQFSYSISICGLTTDGSILMIESSTMENFFCLS 363
           S S  SY   IC LT    +  + + T  N F LS
Sbjct: 481 SLSDGSYFGEICLLTNARRVASVRAETYCNLFSLS 515


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -1

Query: 112 KLSNTGKIITNYVVLLKDE 56
           ++   G+I+TNY+  + DE
Sbjct: 32  RILQNGRILTNYIKCMLDE 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 258,727
Number of Sequences: 438
Number of extensions: 6299
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)