Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_F24
         (895 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0)                       30   2.9  
SB_28448| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  

>SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1705

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 226  NNHHSYAENCNLHDANCLQTK 164
            +NH  YA NC+ +DANC  TK
Sbjct: 1136 SNHSYYAHNCH-YDANCTNTK 1155



 Score = 28.7 bits (61), Expect = 6.7
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 226 NNHHSYAENCNLHDANCLQTK 164
           +NH  YA NC   DANC  TK
Sbjct: 194 SNHSHYAHNCQ-SDANCTNTK 213



 Score = 28.7 bits (61), Expect = 6.7
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 226 NNHHSYAENCNLHDANCLQTK 164
           +NH  YA NC   DANC  TK
Sbjct: 634 SNHSHYAHNCQ-SDANCTNTK 653



 Score = 28.7 bits (61), Expect = 6.7
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 223  NHHSYAENCNLHDANCLQTK 164
            NH  YA NC+  DANC  TK
Sbjct: 1337 NHSHYAHNCH-SDANCTNTK 1355


>SB_28448| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1333

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = +3

Query: 459 KPTGRIHRISIKDRIVFSITP 521
           +PTGR+HR+   D+ VFS+TP
Sbjct: 376 EPTGRVHRVP-DDQGVFSVTP 395


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,897,634
Number of Sequences: 59808
Number of extensions: 404816
Number of successful extensions: 1013
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2562198215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)