Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_F21
         (911 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965...   241   4e-64
08_02_0586 - 19024584-19024655,19024745-19024855,19024967-190250...   146   3e-35
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376...    31   0.96 
05_01_0600 + 5381879-5381995,5382061-5382216,5382521-5382604,538...    29   6.8  

>04_04_1630 -
           34896021-34896143,34896329-34896403,34896500-34896556,
           34897176-34897352,34897426-34897492,34898043-34898101,
           34898188-34898241,34898455-34898604,34898709-34898918,
           34898980-34899039,34899399-34899527,34899616-34899720,
           34899935-34900024,34900630-34900695,34901047-34901115,
           34901348-34901467,34901572-34901634,34901681-34901817,
           34902070-34902160,34902298-34902463,34902700-34904172,
           34905666-34905940,34906322-34906819,34906996-34907145,
           34907840-34907911,34908006-34908266,34908478-34908558,
           34908745-34908996,34909323-34909382,34909602-34909853,
           34910385-34910549,34910589-34910849,34911267-34912307,
           34913398-34913457,34914055-34914165,34914448-34914534,
           34915227-34915300,34915397-34915490,34915644-34915689,
           34916397-34916521
          Length = 2501

 Score =  241 bits (591), Expect = 4e-64
 Identities = 110/186 (59%), Positives = 130/186 (69%), Gaps = 1/186 (0%)
 Frame = +1

Query: 256 INLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLPHVLL 435
           +N+YPL NYTFGTKEP  EKD SV  RF RM+  + K GMR SVE +LLV EH  PH+LL
Sbjct: 9   VNVYPLANYTFGTKEPKMEKDTSVADRFARMKVNYMKEGMRTSVEAILLVQEHNHPHILL 68

Query: 436 LQLGTAFFKLPGGELNPGEDEIDGLKRLLTETLG-RQDGVKQEWLIEDTIGNWWRPNFEP 612
           LQ+G  F KLPGG L PGE+EI+GLKR L   L          W + + +  WWRPNFE 
Sbjct: 69  LQIGNTFCKLPGGRLKPGENEIEGLKRKLCSKLAVNSPSFPPNWQVGECVAVWWRPNFET 128

Query: 613 PQYPYIPPHITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPLFELYDNAQGYGPIISSL 792
             YPY PPHITKPKE K+LF+V L +R  FAVP+N KL+A PLFELYDN Q YGP+IS++
Sbjct: 129 VMYPYCPPHITKPKECKKLFIVHLSEREYFAVPRNLKLLAVPLFELYDNVQRYGPVISTI 188

Query: 793 SQSLCR 810
            Q L R
Sbjct: 189 PQQLSR 194


>08_02_0586 -
           19024584-19024655,19024745-19024855,19024967-19025053,
           19025154-19025245,19025456-19025595,19025689-19025867
          Length = 226

 Score =  146 bits (353), Expect = 3e-35
 Identities = 82/204 (40%), Positives = 114/204 (55%), Gaps = 11/204 (5%)
 Frame = +1

Query: 256 INLYPLTNYTFGTKEPLFEKDAS----VPARFQRMREEFCKIGMRRSVEGVLLVHEHGLP 423
           + +YPL  Y FG ++       +       R  R++  F   G+R SV GVLLV     P
Sbjct: 23  VEIYPLCRYYFGARDVAAGGAGAGLETAADRALRLKANFAAHGLRTSVHGVLLVELFDHP 82

Query: 424 HVLLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETL---GRQDGVK----QEWLIEDTI 582
           HVLLLQ+  + F LPGG L PGE ++ GLKR L+  L   G QD        EW I + I
Sbjct: 83  HVLLLQVRNSSFLLPGGRLRPGEQDVQGLKRKLSTKLSVAGHQDDEDGDGDDEWQIGECI 142

Query: 583 GNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPLFELYDNA 762
           G WWR  F+   +PY+ P+   PKE  +LFL++L     F VP+N KL+A PL +++DNA
Sbjct: 143 GMWWRSEFDAAPFPYLLPNARAPKECIKLFLIKLPVSRQFVVPRNMKLLAVPLSQIHDNA 202

Query: 763 QGYGPIISSLSQSLCRLISLYVIN 834
           Q YG II+ +   L +  S+ +I+
Sbjct: 203 QVYGSIIAGIPNLLSK-FSMNIIS 225


>06_01_0520 +
           3761990-3762327,3763304-3763589,3763746-3763820,
           3764013-3764961,3766967-3767064,3768144-3768284,
           3768758-3768874,3768924-3769013,3769014-3771818
          Length = 1632

 Score = 31.5 bits (68), Expect = 0.96
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = +1

Query: 70  VWFGKTIFSCD-HLCIRG-FV-KNKIKYKMAAVQGPPGNKQWPARPGLQHQISQNPSMNL 240
           +WF K +   + H  I+  F  KNK++Y ++  Q    NK WP  P L   ++     N+
Sbjct: 635 IWFCKPLMESELHDAIQNNFTSKNKLRYGLSHQQIMDLNKTWPLHPILLIHLASELPKNV 694

Query: 241 TLNRSINLYPL 273
           +L + + L  L
Sbjct: 695 SLMQVVRLLHL 705


>05_01_0600 +
           5381879-5381995,5382061-5382216,5382521-5382604,
           5382708-5382833,5383801-5383845,5384423-5384554,
           5384682-5384777,5384880-5385041,5385156-5385300,
           5385753-5385825,5386002-5386062,5386419-5386529,
           5386620-5387093,5387173-5387207,5387760-5388318
          Length = 791

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 21/66 (31%), Positives = 30/66 (45%)
 Frame = +3

Query: 366 NRNEKVGRRCVIST*TWSTSCAVTATRHCVFQVTRWRIEPWRG*N*WFEEASHRDFRQAR 545
           N  ++VGR  +          A+T TR C+  V   +IE WR       EAS R F++A 
Sbjct: 712 NDGKEVGRGKIFQVEGRLQGKALTDTRVCIVDVIELKIEKWRELP-HPSEASGRTFQEAE 770

Query: 546 RCQTGM 563
               G+
Sbjct: 771 SRNGGV 776


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,959,212
Number of Sequences: 37544
Number of extensions: 517094
Number of successful extensions: 1408
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1405
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)