Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_F21
         (911 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79755-4|CAB02106.1|  227|Caenorhabditis elegans Hypothetical pr...   300   1e-81
Z93393-5|CAB07690.1|  611|Caenorhabditis elegans Hypothetical pr...    33   0.37 
U21318-2|AAC46668.1|  285|Caenorhabditis elegans Collagen protei...    32   0.65 

>Z79755-4|CAB02106.1|  227|Caenorhabditis elegans Hypothetical
           protein F43G9.5 protein.
          Length = 227

 Score =  300 bits (736), Expect = 1e-81
 Identities = 133/188 (70%), Positives = 155/188 (82%)
 Frame = +1

Query: 247 NRSINLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLPH 426
           NR+IN+YPLTNYTFGTK+   EKD SVP RF+RM++E+  +GMRRSVE VL+VHEH LPH
Sbjct: 31  NRTINVYPLTNYTFGTKDAQAEKDKSVPERFKRMKDEYEVMGMRRSVEAVLIVHEHSLPH 90

Query: 427 VLLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETLGRQDGVKQEWLIEDTIGNWWRPNF 606
           +LLLQ+GT F+KLPGGEL  GEDEI G+ RLL ETLGR DG   EW IED IGNWWRPNF
Sbjct: 91  ILLLQIGTTFYKLPGGELELGEDEISGVTRLLNETLGRTDGETNEWTIEDEIGNWWRPNF 150

Query: 607 EPPQYPYIPPHITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPLFELYDNAQGYGPIIS 786
           +PP+YPYIP H+TKPKEH +L LVQL  ++ F VPKN+KLVAAPLFELYDNA  YGP+IS
Sbjct: 151 DPPRYPYIPAHVTKPKEHTKLLLVQLPSKSTFCVPKNFKLVAAPLFELYDNAAAYGPLIS 210

Query: 787 SLSQSLCR 810
           SL  +L R
Sbjct: 211 SLPTTLSR 218


>Z93393-5|CAB07690.1|  611|Caenorhabditis elegans Hypothetical
           protein Y48E1B.4 protein.
          Length = 611

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +1

Query: 529 TLGRQDGVKQEWLIEDTIGNWWRPNFEPPQ----YPYIPPHITKPKEHKRL 669
           T  R DG K  W+ +  + N+WR    P Q     P IPP +  P +  RL
Sbjct: 38  TTPRPDG-KTRWIPQYNLQNFWRRKIPPLQCGLIEPLIPPRLRSPDDFSRL 87


>U21318-2|AAC46668.1|  285|Caenorhabditis elegans Collagen protein
           75 protein.
          Length = 285

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +1

Query: 88  IFSCDHLCIRGFVKNKIKYKMAAVQGPPGNKQWPARPGLQHQISQNPSMNL 240
           +F C  +C  G  K K  YK   + GPPG   WP  PG++    +  S  L
Sbjct: 124 VFGC-RICPYG-PKGKSGYK--GIDGPPGIPGWPGEPGVRGMNGERGSTGL 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,958,757
Number of Sequences: 27780
Number of extensions: 462248
Number of successful extensions: 1440
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1440
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)