Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_F19
         (935 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8GD27 Cluster: Adhesin FhaB; n=3; cellular organisms|R...    37   0.85 
UniRef50_Q9NGX2 Cluster: Diaphanous protein; n=3; Entamoeba hist...    33   7.9  

>UniRef50_Q8GD27 Cluster: Adhesin FhaB; n=3; cellular organisms|Rep:
            Adhesin FhaB - Bordetella avium
          Length = 2621

 Score = 36.7 bits (81), Expect = 0.85
 Identities = 31/112 (27%), Positives = 32/112 (28%), Gaps = 2/112 (1%)
 Frame = +1

Query: 580  INPXPPXXXXKXPPPPXKKXXVXKKKXPXFXPPPXKXKKXGXXXXXXXXXXXXXXXXGXX 759
            I+P PP      PPPP       KK  P   PPP K KK                     
Sbjct: 2317 IDPSPPPPPPPPPPPPPPPK--VKKVDPPPPPPPPKVKKVDPPPPPPPPPPKVKKVDPPP 2374

Query: 760  FXXXPPPPXKKXG--VXFGPXXKXXXGXXXPPPQKXKXXXXXKKXXXXXPPP 909
                PPP  KK        P          PPP         KK     PPP
Sbjct: 2375 PPPPPPPKVKKVDPPPPPPPPPPPKVKKVDPPPPPPPPPPKVKKVDPPPPPP 2426


>UniRef50_Q9NGX2 Cluster: Diaphanous protein; n=3; Entamoeba
           histolytica|Rep: Diaphanous protein - Entamoeba
           histolytica
          Length = 1209

 Score = 33.5 bits (73), Expect = 7.9
 Identities = 22/89 (24%), Positives = 23/89 (25%)
 Frame = +1

Query: 586 PXPPXXXXKXPPPPXKKXXVXKKKXPXFXPPPXKXKKXGXXXXXXXXXXXXXXXXGXXFX 765
           P PP      PPPP           P   PPP      G                     
Sbjct: 600 PPPPPGASSVPPPPPPPGMPGMPGMPGMPPPPPPPGMPGMPPPPPPPGMPGMPPPPPGMP 659

Query: 766 XXPPPPXKKXGVXFGPXXKXXXGXXXPPP 852
             PPPP    G+   P      G   PPP
Sbjct: 660 GMPPPPPGMPGMP--PPPPGMPGMPPPPP 686


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 633,078,422
Number of Sequences: 1657284
Number of extensions: 11112609
Number of successful extensions: 33280
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25800
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 85732778670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)